# ==================================================================== #
# TITLE                                                                #
# Antimicrobial Resistance (AMR) Analysis                              #
#                                                                      #
# SOURCE                                                               #
# https://github.com/msberends/AMR                                     #
#                                                                      #
# LICENCE                                                              #
# (c) 2018-2020 Berends MS, Luz CF et al.                              #
#                                                                      #
# This R package is free software; you can freely use and distribute   #
# it for both personal and commercial purposes under the terms of the  #
# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
# the Free Software Foundation.                                        #
#                                                                      #
# We created this package for both routine data analysis and academic  #
# research and it was publicly released in the hope that it will be    #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
# Visit our website for more info: https://msberends.github.io/AMR.    #
# ==================================================================== #

globalVariables(c(".",
                  "..property",
                  "ab",
                  "ab_txt",
                  "abbreviations",
                  "angle",
                  "antibiotic",
                  "antibiotics",
                  "atc_group1",
                  "atc_group2",
                  "CNS_CPS",
                  "code",
                  "col_id",
                  "count",
                  "count.x",
                  "date_lab",
                  "diff.percent",
                  "First name",
                  "first_isolate_row_index",
                  "fullname",
                  "fullname_lower",
                  "g_species",
                  "genus",
                  "gr",
                  "gramstain",
                  "group",
                  "hjust",
                  "index",
                  "input",
                  "interpretation",
                  "isolates",
                  "item",
                  "key_ab",
                  "key_ab_lag",
                  "key_ab_other",
                  "kingdom",
                  "kingdom_index",
                  "lang",
                  "Last name",
                  "lookup",
                  "mdr",
                  "MDRO",
                  "median",
                  "microorganisms",
                  "microorganisms.codes",
                  "microorganisms.old",
                  "missing_names",
                  "mo",
                  "mo_new",
                  "mo_old",
                  "mono_count",
                  "more_than_episode_ago",
                  "name",
                  "new",
                  "newvar_date",
                  "newvar_genus_species",
                  "newvar_mo",
                  "newvar_patient_id",
                  "newvar_row_index",
                  "newvar_row_index_sorted",
                  "observations",
                  "observed",
                  "old",
                  "old_name",
                  "other_pat_or_mo",
                  "package_version",
                  "patient_id",
                  "pattern",
                  "plural",
                  "prevalence",
                  "R",
                  "real_first_isolate",
                  "ref",
                  "rsi_translation",
                  "rule_group",
                  "rule_name",
                  "S",
                  "se_max",
                  "se_min",
                  "second",
                  "Sex",
                  "species",
                  "species_id",
                  "subspecies",
                  "synonyms",
                  "total",
                  "txt",
                  "uncertainty_level",
                  "value",
                  "varname",
                  "x",
                  "xdr",
                  "xvar",
                  "y",
                  "year",
                  "yvar"))