# Generated by roxygen2: do not edit by hand S3method("[",ab) S3method("[",disk) S3method("[",mic) S3method("[",mo) S3method("[<-",ab) S3method("[<-",disk) S3method("[<-",mic) S3method("[<-",mo) S3method("[<-",rsi) S3method("[[",ab) S3method("[[",disk) S3method("[[",mic) S3method("[[",mo) S3method("[[<-",ab) S3method("[[<-",disk) S3method("[[<-",mic) S3method("[[<-",mo) S3method("[[<-",rsi) S3method(as.data.frame,ab) S3method(as.data.frame,disk) S3method(as.data.frame,mo) S3method(as.double,mic) S3method(as.integer,mic) S3method(as.numeric,mic) S3method(as.rsi,data.frame) S3method(as.rsi,default) S3method(as.rsi,disk) S3method(as.rsi,mic) S3method(barplot,mic) S3method(barplot,rsi) S3method(c,ab) S3method(c,disk) S3method(c,mic) S3method(c,mo) S3method(c,rsi) S3method(droplevels,mic) S3method(droplevels,rsi) S3method(format,bug_drug_combinations) S3method(freq,mo) S3method(freq,rsi) S3method(kurtosis,data.frame) S3method(kurtosis,default) S3method(kurtosis,matrix) S3method(pillar_shaft,ab) S3method(pillar_shaft,disk) S3method(pillar_shaft,mic) S3method(pillar_shaft,mo) S3method(pillar_shaft,rsi) S3method(plot,mic) S3method(plot,resistance_predict) S3method(plot,rsi) S3method(print,ab) S3method(print,bug_drug_combinations) S3method(print,catalogue_of_life_version) S3method(print,disk) S3method(print,mic) S3method(print,mo) S3method(print,mo_renamed) S3method(print,mo_uncertainties) S3method(print,rsi) S3method(skewness,data.frame) S3method(skewness,default) S3method(skewness,matrix) S3method(summary,mic) S3method(summary,mo) S3method(summary,rsi) S3method(vec_cast.ab,ab) S3method(vec_cast.ab,character) S3method(vec_cast.ab,default) S3method(vec_cast.character,ab) S3method(vec_cast.character,mo) S3method(vec_cast.mo,character) S3method(vec_cast.mo,default) S3method(vec_cast.mo,mo) S3method(vec_ptype2.ab,character) S3method(vec_ptype2.ab,default) S3method(vec_ptype2.character,ab) S3method(vec_ptype2.character,mo) S3method(vec_ptype2.mo,character) S3method(vec_ptype2.mo,default) S3method(vec_ptype_abbr,ab) S3method(vec_ptype_abbr,disk) S3method(vec_ptype_abbr,mic) S3method(vec_ptype_abbr,mo) S3method(vec_ptype_abbr,rsi) S3method(vec_ptype_full,ab) S3method(vec_ptype_full,disk) S3method(vec_ptype_full,mic) S3method(vec_ptype_full,mo) S3method(vec_ptype_full,rsi) export("%like%") export("%like_case%") export(ab_atc) export(ab_atc_group1) export(ab_atc_group2) export(ab_cid) export(ab_ddd) export(ab_group) export(ab_info) export(ab_loinc) export(ab_name) export(ab_property) export(ab_synonyms) export(ab_tradenames) export(age) export(age_groups) export(anti_join_microorganisms) export(as.ab) export(as.disk) export(as.mic) export(as.mo) export(as.rsi) export(atc_online_ddd) export(atc_online_groups) export(atc_online_property) export(availability) export(brmo) export(bug_drug_combinations) export(catalogue_of_life_version) export(count_I) export(count_IR) export(count_R) export(count_S) export(count_SI) export(count_all) export(count_df) export(count_resistant) export(count_susceptible) export(eucast_exceptional_phenotypes) export(eucast_rules) export(facet_rsi) export(filter_1st_cephalosporins) export(filter_2nd_cephalosporins) export(filter_3rd_cephalosporins) export(filter_4th_cephalosporins) export(filter_5th_cephalosporins) export(filter_ab_class) export(filter_aminoglycosides) export(filter_carbapenems) export(filter_cephalosporins) export(filter_first_isolate) export(filter_first_weighted_isolate) export(filter_fluoroquinolones) export(filter_glycopeptides) export(filter_macrolides) export(filter_tetracyclines) export(first_isolate) export(freq) export(full_join_microorganisms) export(g.test) export(geom_rsi) export(get_locale) export(get_mo_source) export(ggplot_pca) export(ggplot_rsi) export(ggplot_rsi_predict) export(guess_ab_col) export(inner_join_microorganisms) export(is.ab) export(is.disk) export(is.mic) export(is.mo) export(is.rsi) export(is.rsi.eligible) export(key_antibiotics) export(key_antibiotics_equal) export(kurtosis) export(labels_rsi_count) export(left_join_microorganisms) export(like) export(mdr_cmi2012) export(mdr_tb) export(mdro) export(mo_authors) export(mo_class) export(mo_failures) export(mo_family) export(mo_fullname) export(mo_genus) export(mo_gramstain) export(mo_info) export(mo_kingdom) export(mo_name) export(mo_order) export(mo_phylum) export(mo_property) export(mo_rank) export(mo_ref) export(mo_renamed) export(mo_shortname) export(mo_snomed) export(mo_species) export(mo_subspecies) export(mo_synonyms) export(mo_taxonomy) export(mo_type) export(mo_uncertainties) export(mo_url) export(mo_year) export(mrgn) export(n_rsi) export(p_symbol) export(pca) export(portion_I) export(portion_IR) export(portion_R) export(portion_S) export(portion_SI) export(portion_df) export(proportion_I) export(proportion_IR) export(proportion_R) export(proportion_S) export(proportion_SI) export(proportion_df) export(read.4D) export(resistance) export(resistance_predict) export(right_join_microorganisms) export(rsi_df) export(rsi_predict) export(scale_rsi_colours) export(scale_type.ab) export(scale_type.mo) export(scale_y_percent) export(semi_join_microorganisms) export(set_mo_source) export(skewness) export(susceptibility) export(theme_rsi) export(vec_cast.ab) export(vec_cast.mo) export(vec_ptype2.ab) export(vec_ptype2.mo) exportMethods("[.ab") exportMethods("[.disk") exportMethods("[.mic") exportMethods("[.mo") exportMethods("[<-.ab") exportMethods("[<-.disk") exportMethods("[<-.mic") exportMethods("[<-.mo") exportMethods("[<-.rsi") exportMethods("[[.ab") exportMethods("[[.disk") exportMethods("[[.mic") exportMethods("[[.mo") exportMethods("[[<-.ab") exportMethods("[[<-.disk") exportMethods("[[<-.mic") exportMethods("[[<-.mo") exportMethods("[[<-.rsi") exportMethods(as.data.frame.ab) exportMethods(as.data.frame.disk) exportMethods(as.data.frame.mo) exportMethods(as.double.mic) exportMethods(as.integer.mic) exportMethods(as.numeric.mic) exportMethods(barplot.mic) exportMethods(barplot.rsi) exportMethods(c.ab) exportMethods(c.disk) exportMethods(c.mic) exportMethods(c.mo) exportMethods(c.rsi) exportMethods(droplevels.mic) exportMethods(droplevels.rsi) exportMethods(format.bug_drug_combinations) exportMethods(freq.mo) exportMethods(freq.rsi) exportMethods(kurtosis) exportMethods(kurtosis.data.frame) exportMethods(kurtosis.default) exportMethods(kurtosis.matrix) exportMethods(plot.mic) exportMethods(plot.rsi) exportMethods(print.ab) exportMethods(print.bug_drug_combinations) exportMethods(print.catalogue_of_life_version) exportMethods(print.disk) exportMethods(print.mic) exportMethods(print.mo) exportMethods(print.mo_renamed) exportMethods(print.mo_uncertainties) exportMethods(print.rsi) exportMethods(scale_type.ab) exportMethods(scale_type.mo) exportMethods(skewness) exportMethods(skewness.data.frame) exportMethods(skewness.default) exportMethods(skewness.matrix) exportMethods(summary.mic) exportMethods(summary.mo) exportMethods(summary.rsi) exportMethods(vec_cast.character.ab) exportMethods(vec_cast.character.mo) exportMethods(vec_ptype2.character.ab) exportMethods(vec_ptype2.character.mo) exportMethods(vec_ptype_abbr.ab) exportMethods(vec_ptype_abbr.disk) exportMethods(vec_ptype_abbr.mic) exportMethods(vec_ptype_abbr.mo) exportMethods(vec_ptype_abbr.rsi) exportMethods(vec_ptype_full.ab) exportMethods(vec_ptype_full.disk) exportMethods(vec_ptype_full.mic) exportMethods(vec_ptype_full.mo) exportMethods(vec_ptype_full.rsi) importFrom(cleaner,freq) importFrom(cleaner,freq.default) importFrom(graphics,arrows) importFrom(graphics,axis) importFrom(graphics,barplot) importFrom(graphics,par) importFrom(graphics,plot) importFrom(graphics,points) importFrom(graphics,text) importFrom(pillar,pillar_shaft) importFrom(stats,complete.cases) importFrom(stats,glm) importFrom(stats,lm) importFrom(stats,pchisq) importFrom(stats,prcomp) importFrom(stats,predict) importFrom(stats,qchisq) importFrom(stats,var) importFrom(tidyr,pivot_longer) importFrom(tidyr,pivot_wider) importFrom(vctrs,vec_cast) importFrom(vctrs,vec_cast.character) importFrom(vctrs,vec_default_cast) importFrom(vctrs,vec_ptype2.character) importFrom(vctrs,vec_ptype_abbr) importFrom(vctrs,vec_ptype_full)