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A data set containing species groups and microbiological complexes, which are used in the clinical breakpoints table.

Usage

microorganisms.groups

Format

A tibble with 444 observations and 4 variables:

  • mo_group
    ID of the species group / microbiological complex

  • mo
    ID of the microorganism belonging in the species group / microbiological complex

  • mo_group_name
    Name of the species group / microbiological complex, as retrieved with mo_name()

  • mo_name
    Name of the microorganism belonging in the species group / microbiological complex, as retrieved with mo_name()

Details

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

Examples

microorganisms.groups
#> Error in .Call(Cchin, x, table): NULL value passed as symbol address

# these are all species in the Bacteroides fragilis group, as per WHONET:
microorganisms.groups[microorganisms.groups$mo_group == "B_BCTRD_FRGL-C", ]
#> Error in .Call(Cchin, x, table): NULL value passed as symbol address