septic_patients.RdAn anonymised data set containing 2,000 microbial blood culture isolates with their full antibiograms found in septic patients in 4 different hospitals in the Netherlands, between 2001 and 2017. It is true, genuine data. This data.frame can be used to practice AMR analysis. For examples, please read the tutorial on our website.
septic_patients
A data.frame with 2,000 observations and 49 variables:
datedate of receipt at the laboratory
hospital_idID of the hospital, from A to D
ward_iculogical to determine if ward is an intensive care unit
ward_clinicallogical to determine if ward is a regular clinical ward
ward_outpatientlogical to determine if ward is an outpatient clinic
ageage of the patient
gendergender of the patient
patient_idID of the patient, first 10 characters of an SHA hash containing irretrievable information
moID of microorganism created with as.mo, see also microorganisms
peni:rifa40 different antibiotics with class rsi (see as.rsi); these column names occur in antibiotics data set and can be translated with abname
On our website https://msberends.gitlab.io/AMR you can find a tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.