For language-dependent output of AMR functions, like mo_name()
, mo_gramstain()
, mo_type()
and ab_name()
.
Usage
get_AMR_locale()
set_AMR_locale(language)
reset_AMR_locale()
translate_AMR(x, language = get_AMR_locale())
Arguments
- language
language to choose. Use one of these supported language names or ISO-639-1 codes: "English" ("en"), "Chinese" ("zh"), "Danish" ("da"), "Dutch" ("nl"), "French" ("fr"), "German" ("de"), "Greek" ("el"), "Italian" ("it"), "Japanese" ("ja"), "Polish" ("pl"), "Portuguese" ("pt"), "Russian" ("ru"), "Spanish" ("es"), "Swedish" ("sv"), "Turkish" ("tr"), "Ukrainian" ("uk").
- x
text to translate
Details
The currently 16 supported languages are English, Chinese, Danish, Dutch, French, German, Greek, Italian, Japanese, Polish, Portuguese, Russian, Spanish, Swedish, Turkish and Ukrainian. All these languages have translations available for all antimicrobial agents and colloquial microorganism names.
Please read about adding or updating a language in our Wiki.
Changing the Default Language
The system language will be used at default (as returned by Sys.getenv("LANG")
or, if LANG
is not set, Sys.getlocale("LC_COLLATE")
), if that language is supported. But the language to be used can be overwritten in two ways and will be checked in this order:
Setting the R option
AMR_locale
, either by usingset_AMR_locale()
or by running e.g.options(AMR_locale = "de")
.Note that setting an R option only works in the same session. Save the command
options(AMR_locale = "(your language)")
to your.Rprofile
file to apply it for every session.Setting the system variable
LANGUAGE
orLANG
, e.g. by addingLANGUAGE="de_DE.utf8"
to your.Renviron
file in your home directory.
Thus, if the R option AMR_locale
is set, the system variables LANGUAGE
and LANG
will be ignored.
Examples
# Current settings (based on system language)
ab_name("Ciprofloxacin")
#> [1] "Ciprofloxacin"
mo_name("Coagulase-negative Staphylococcus")
#> [1] "Coagulase-negative Staphylococcus (CoNS)"
# setting another language
set_AMR_locale("Greek")
#> ℹ Using the Greek language (Ελληνικά) for the AMR package for this session.
ab_name("Ciprofloxacin")
#> [1] "Σιπροφλοξασίνη"
mo_name("Coagulase-negative Staphylococcus")
#> [1] "Σταφυλόκοκκος με αρνητική πηκτικότητα (CoNS)"
set_AMR_locale("Spanish")
#> ℹ Using the Spanish language (Español) for the AMR package for this
#> session.
ab_name("Ciprofloxacin")
#> [1] "Ciprofloxacina"
mo_name("Coagulase-negative Staphylococcus")
#> [1] "Staphylococcus coagulasa negativo (SCN)"
# set_AMR_locale() understands endonyms, English exonyms, and ISO-639-1:
set_AMR_locale("Deutsch")
#> ℹ Using the German language (Deutsch) for the AMR package for this session.
set_AMR_locale("German")
#> ℹ Using the German language (Deutsch) for the AMR package for this session.
set_AMR_locale("de")
#> ℹ Using the German language (Deutsch) for the AMR package for this session.
# reset to system default
reset_AMR_locale()