# ==================================================================== #
# TITLE                                                                #
# Antimicrobial Resistance (AMR) Analysis                              #
#                                                                      #
# AUTHORS                                                              #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl)           #
#                                                                      #
# LICENCE                                                              #
# This package is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0,    #
# as published by the Free Software Foundation.                        #
#                                                                      #
# This R package is distributed in the hope that it will be useful,    #
# but WITHOUT ANY WARRANTY; without even the implied warranty of       #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the        #
# GNU General Public License version 2.0 for more details.             #
# ==================================================================== #

globalVariables(c(".",
                  "..property",
                  "antibiotic",
                  "Antibiotic",
                  "antibiotics",
                  "authors",
                  "Becker",
                  "cnt",
                  "count",
                  "count.x",
                  "count.y",
                  "cum_count",
                  "cum_percent",
                  "date_lab",
                  "days_diff",
                  "diff.percent",
                  "fctlvl",
                  "first_isolate_row_index",
                  "Freq",
                  "fullname",
                  "genus",
                  "gramstain",
                  "index",
                  "Interpretation",
                  "item",
                  "key_ab",
                  "key_ab_lag",
                  "key_ab_other",
                  "Lancefield",
                  "lbl",
                  "median",
                  "mic",
                  "microorganisms",
                  "microorganisms.old",
                  "microorganismsDT",
                  "microorganisms.prevDT",
                  "microorganisms.unprevDT",
                  "microorganisms.oldDT",
                  "microorganisms.certe",
                  "microorganisms.umcg",
                  "mo",
                  "mo.old",
                  "n",
                  "name",
                  "observations",
                  "other_pat_or_mo",
                  "Pasted",
                  "patient_id",
                  "prevalence",
                  "psae",
                  "R",
                  "ref",
                  "real_first_isolate",
                  "S",
                  "septic_patients",
                  "shortname",
                  "species",
                  "tsn",
                  "tsn_new",
                  "value",
                  "Value",
                  "y",
                  "year"))