# ==================================================================== # # TITLE # # Antimicrobial Resistance (AMR) Analysis # # # # AUTHORS # # Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) # # # # LICENCE # # This package is free software; you can redistribute it and/or modify # # it under the terms of the GNU General Public License version 2.0, # # as published by the Free Software Foundation. # # # # This R package is distributed in the hope that it will be useful, # # but WITHOUT ANY WARRANTY; without even the implied warranty of # # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # # GNU General Public License version 2.0 for more details. # # ==================================================================== # context("atc.R") # test_that("atc_property works", { # skip_on_cran() # relies on internet connection of server, don't test # skip_on_appveyor() # security error on AppVeyor # # if (!is.null(curl::nslookup("www.whocc.no", error = FALSE))) { # expect_equal(tolower(atc_property("J01CA04", property = "Name")), "amoxicillin") # expect_equal(atc_property("J01CA04", property = "unit"), "g") # expect_equal(atc_property("J01CA04", property = "DDD"), # atc_ddd("J01CA04")) # # expect_identical(atc_property("J01CA04", property = "Groups"), # atc_groups("J01CA04")) # # expect_warning(atc_property("ABCDEFG", property = "DDD")) # # expect_error(atc_property("J01CA04", property = c(1:5))) # expect_error(atc_property("J01CA04", property = "test")) # expect_error(atc_property("J01CA04", property = "test", administration = c(1:5))) # } # }) test_that("guess_atc works", { expect_equal(as.character(guess_atc(c("J01FA01", "Erythromycin", "eryt", "ERYT", "ERY", "Erythrocin", "Eryzole", "Pediamycin"))), rep("J01FA01", 8)) expect_identical(class(as.atc("amox")), "atc") expect_identical(class(pull(antibiotics, atc)), "atc") expect_identical(ab_trivial_nl("Cefmenoxim"), "Cefmenoxim") expect_warning(as.atc("Z00ZZ00")) # not yet available in data set expect_warning(as.atc("UNKNOWN")) expect_output(print(as.atc("amox"))) # first 5 chars of official name expect_equal(as.character(as.atc(c("nitro", "cipro"))), c("J01XE01", "J01MA02")) })