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Data Set with 5,932 Common Microorganism Codes

Source: R/data.R
microorganisms.codes.Rd

A data set containing commonly used codes for microorganisms, from laboratory systems and WHONET. Define your own with set_mo_source(). They will all be searched when using as.mo() and consequently all the mo_* functions.

Usage

microorganisms.codes

Format

A tibble with 5,932 observations and 2 variables:

  • code
    Commonly used code of a microorganism

  • mo
    ID of the microorganism in the microorganisms data set

Details

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

See also

as.mo() microorganisms

Examples

microorganisms.codes
#> # A tibble: 5,932 × 2
#>    code    mo       
#>    <chr>   <mo>     
#>  1 _FAM_A- B_GRAMN  
#>  2 _FAM_A+ B_GRAMP  
#>  3 _FAM_AC B_GRAMP  
#>  4 _FAM_AE B_GRAMN  
#>  5 _FAM_AN B_GRAMN  
#>  6 _FAM_AO B_GRAMP  
#>  7 _FAM_AP   UNKNOWN
#>  8 _FAM_AS F_FUNGUS 
#>  9 _FAM_AT   UNKNOWN
#> 10 _FAM_AV   UNKNOWN
#> # … with 5,922 more rows