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      <img src="../logo.svg" class="logo" alt=""><h1>Check Availability of Columns</h1>
      <small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/R/availability.R" class="external-link"><code>R/availability.R</code></a></small>
      <div class="d-none name"><code>availability.Rd</code></div>
    </div>

    <div class="ref-description section level2">
    <p>Easy check for data availability of all columns in a data set. This makes it easy to get an idea of which antimicrobial combinations can be used for calculation with e.g. <code><a href="proportion.html">susceptibility()</a></code> and <code><a href="proportion.html">resistance()</a></code>.</p>
    </div>

    <div class="section level2">
    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">availability</span><span class="op">(</span><span class="va">tbl</span>, width <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
    </div>

    <div class="section level2">
    <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
    <dl><dt>tbl</dt>
<dd><p>a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> or <a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></p></dd>


<dt>width</dt>
<dd><p>number of characters to present the visual availability, defaults to filling the width of the console</p></dd>

</dl></div>
    <div class="section level2">
    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
    

<p><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> with column names of <code>tbl</code> as row names</p>
    </div>
    <div class="section level2">
    <h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
    <p>The function returns a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> with columns <code>"resistant"</code> and <code>"visual_resistance"</code>. The values in that columns are calculated with <code><a href="proportion.html">resistance()</a></code>.</p>
    </div>

    <div class="section level2">
    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">availability</span><span class="op">(</span><span class="va">example_isolates</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span>         count available     visual_availabilty resistant      visual_resistance</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> date     2000    100.0% |####################|                                 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> patient  2000    100.0% |####################|                                 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> age      2000    100.0% |####################|                                 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> gender   2000    100.0% |####################|                                 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ward     2000    100.0% |####################|                                 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> mo       2000    100.0% |####################|                                 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> PEN      1629     81.5% |################----|     73.7% |##############------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> OXA       365     18.3% |###-----------------|     31.2% |######--------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FLC       943     47.2% |#########-----------|     29.5% |#####---------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMX      1350     67.5% |#############-------|     59.6% |###########---------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMC      1879     94.0% |##################--|     23.7% |####----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMP      1350     67.5% |#############-------|     59.6% |###########---------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TZP      1001     50.0% |##########----------|     12.6% |##------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CZO       446     22.3% |####----------------|     44.6% |########------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FEP       724     36.2% |#######-------------|     14.2% |##------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CXM      1789     89.5% |#################---|     26.3% |#####---------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FOX       818     40.9% |########------------|     27.4% |#####---------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CTX       943     47.2% |#########-----------|     15.5% |###-----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CAZ      1811     90.6% |##################--|     66.5% |#############-------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CRO       943     47.2% |#########-----------|     15.5% |###-----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> GEN      1855     92.8% |##################--|     24.6% |####----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TOB      1351     67.6% |#############-------|     34.4% |######--------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMK       692     34.6% |######--------------|     63.7% |############--------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> KAN       471     23.6% |####----------------|    100.0% |####################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TMP      1499     75.0% |###############-----|     38.1% |#######-------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> SXT      1759     88.0% |#################---|     20.5% |####----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> NIT       743     37.2% |#######-------------|     17.1% |###-----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FOS       351     17.6% |###-----------------|     42.2% |########------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> LNZ      1023     51.2% |##########----------|     69.3% |#############-------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CIP      1409     70.5% |#############-------|     16.2% |###-----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MFX       211     10.6% |##------------------|     33.6% |######--------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> VAN      1861     93.1% |##################--|     38.3% |#######-------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TEC       976     48.8% |#########-----------|     75.7% |###############-----|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TCY      1200     60.0% |###########---------|     29.8% |#####---------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TGC       798     39.9% |########------------|     12.7% |##------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DOX      1136     56.8% |###########---------|     27.7% |#####---------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ERY      1894     94.7% |##################--|     57.2% |###########---------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CLI      1520     76.0% |###############-----|     61.2% |############--------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AZM      1894     94.7% |##################--|     57.2% |###########---------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> IPM       889     44.5% |########------------|      6.2% |#-------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MEM       829     41.5% |########------------|      5.9% |#-------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MTR        34      1.7% |--------------------|     14.7% |##------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CHL       154      7.7% |#-------------------|     21.4% |####----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> COL      1640     82.0% |################----|     81.2% |################----|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MUP       270     13.5% |##------------------|      5.9% |#-------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> RIF      1003     50.2% |##########----------|     69.6% |#############-------|</span>
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span>  <span class="va">example_isolates</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://dplyr.tidyverse.org/reference/filter.html" class="external-link">filter</a></span><span class="op">(</span><span class="va">mo</span> <span class="op">==</span> <span class="fu"><a href="as.mo.html">as.mo</a></span><span class="op">(</span><span class="st">"Escherichia coli"</span><span class="op">)</span><span class="op">)</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://dplyr.tidyverse.org/reference/select_all.html" class="external-link">select_if</a></span><span class="op">(</span><span class="va">is.rsi</span><span class="op">)</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span></span>
<span class="r-in"><span>    <span class="fu">availability</span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span>     count available       visual_availabilty resistant        visual_resistance</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> PEN   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> OXA     0      0.0% |----------------------|                                   </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FLC     0      0.0% |----------------------|                                   </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMX   392     83.9% |##################----|     50.0% |###########-----------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMC   467    100.0% |######################|     13.1% |##--------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMP   392     83.9% |##################----|     50.0% |###########-----------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TZP   416     89.1% |###################---|      5.5% |#---------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CZO    82     17.6% |###-------------------|      2.4% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FEP   317     67.9% |##############--------|      2.8% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CXM   465     99.6% |######################|      5.4% |#---------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FOX   377     80.7% |#################-----|      6.9% |#---------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CTX   459     98.3% |#####################-|      2.4% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CAZ   460     98.5% |#####################-|      2.4% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CRO   459     98.3% |#####################-|      2.4% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> GEN   460     98.5% |#####################-|      2.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TOB   462     98.9% |#####################-|      2.6% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AMK   171     36.6% |########--------------|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> KAN     0      0.0% |----------------------|                                   </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TMP   396     84.8% |##################----|     39.1% |########--------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> SXT   465     99.6% |######################|     31.6% |######----------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> NIT   458     98.1% |#####################-|      2.8% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FOS    61     13.1% |##--------------------|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> LNZ   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CIP   456     97.6% |#####################-|     12.5% |##--------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MFX    57     12.2% |##--------------------|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> VAN   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TEC   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TCY     3      0.6% |----------------------|     66.7% |##############--------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> TGC    68     14.6% |###-------------------|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DOX     0      0.0% |----------------------|                                   </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ERY   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CLI   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> AZM   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> IPM   422     90.4% |###################---|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MEM   418     89.5% |###################---|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MTR     2      0.4% |----------------------|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> CHL     0      0.0% |----------------------|                                   </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> COL   240     51.4% |###########-----------|      0.0% |----------------------|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> MUP     0      0.0% |----------------------|                                   </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> RIF   467    100.0% |######################|    100.0% |######################|</span>
<span class="r-in"><span><span class="co"># }</span></span></span>
</code></pre></div>
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