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Get properties of an antibiotic </a> </li> <li> <a href="../articles/benchmarks.html"> <span class="fa fa-shipping-fast"></span> Other: benchmarks </a> </li> </ul> </li> <li> <a href="../reference/index.html"> <span class="fa fa-book-open"></span> Manual </a> </li> <li> <a href="../authors.html"> <span class="fa fa-users"></span> Authors </a> </li> <li> <a href="../news/index.html"> <span class="far fa-newspaper"></span> Changelog </a> </li> </ul> <ul class="nav navbar-nav navbar-right"> <li> <a href="https://github.com/msberends/AMR"> <span class="fab fa-github"></span> Source Code </a> </li> </ul> </div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> </header> <div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Articles</h1> </div> <div class="section "> <h3>All vignettes</h3> <p class="section-desc"></p> <dl> <dt><a href="AMR.html">How to conduct AMR data analysis</a></dt> <dd></dt> <dt><a href="EUCAST.html">How to apply EUCAST rules</a></dt> <dd></dt> <dt><a href="MDR.html">How to determine multi-drug resistance (MDR)</a></dt> <dd></dt> <dt><a href="PCA.html">How to conduct principal component analysis (PCA) for AMR</a></dt> <dd></dt> <dt><a href="SPSS.html">How to import data from SPSS / SAS / Stata</a></dt> <dd></dt> <dt><a href="WHONET.html">How to work with WHONET data</a></dt> <dd></dt> <dt><a href="benchmarks.html">Benchmarks</a></dt> <dd></dt> <dt><a href="datasets.html">Data sets for download / own use</a></dt> <dd></dt> <dt><a href="resistance_predict.html">How to predict antimicrobial resistance</a></dt> <dd></dt> <dt><a href="welcome_to_AMR.html">Welcome to the `AMR` package</a></dt> <dd></dt> </dl> </div> </div> </div> <footer> <div class="copyright"> <p><p>Developed by <a href="https://www.rug.nl/staff/m.s.berends/" class="external-link">Matthijs S. 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