Data set with unclean data

A data set containing 3,000 microbial isolates that are not cleaned up and consequently not ready for AMR analysis. This data set can be used for practice.

example_isolates_unclean

Format

A data.frame with 3,000 observations and 8 variables:

• patient_id
  ID of the patient

• date
  date of receipt at the laboratory

• hospital
  ID of the hospital, from A to C

• bacteria
  info about microorganism that can be transformed with as.mo(), see also microorganisms

• AMX:GEN
  4 different antibiotics that have to be transformed with as.rsi()

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a comprehensive tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.