Data set with previously accepted taxonomic names

A data set containing old (previously valid or accepted) taxonomic names according to the Catalogue of Life. This data set is used internally by as.mo().

microorganisms.old

Format

A data.frame with 24,246 observations and 5 variables:

  • col_id
    Catalogue of Life ID that was originally given

  • col_id_new
    New Catalogue of Life ID that responds to an entry in the microorganisms data set

  • fullname
    Old full taxonomic name of the microorganism

  • ref
    Author(s) and year of concerning scientific publication

  • prevalence
    Prevalence of the microorganism, see as.mo()

Source

Catalogue of Life: Annual Checklist (public online taxonomic database), http://www.catalogueoflife.org (check included annual version with catalogue_of_life_version()).

Catalogue of Life


This package contains the complete taxonomic tree of almost all microorganisms (~70,000 species) from the authoritative and comprehensive Catalogue of Life (http://www.catalogueoflife.org). The Catalogue of Life is the most comprehensive and authoritative global index of species currently available.

Click here for more information about the included taxa. Check which version of the Catalogue of Life was included in this package with catalogue_of_life_version().

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a comprehensive tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.

See also

as.mo() mo_property() microorganisms