Data set for RSI interpretation

Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use as.rsi to transform MICs or disks measurements to RSI values.

rsi_translation

Format

A data.frame with 11,559 observations and 9 variables:

guideline

Name of the guideline

mo

Microbial ID, see as.mo

ab

Antibiotic ID, see as.ab

ref_tbl

Info about where the guideline rule can be found

S_mic

Lowest MIC value that leads to "S"

R_mic

Highest MIC value that leads to "R"

dose_disk

Dose of the used disk diffusion method

S_disk

Lowest number of millimeters that leads to "S"

R_disk

Highest number of millimeters that leads to "R"

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.