/*
# ==================================================================== #
# TITLE                                                                #
# Antimicrobial Resistance (AMR) Analysis                              #
#                                                                      #
# SOURCE                                                               #
# https://gitlab.com/msberends/AMR                                     #
#                                                                      #
# LICENCE                                                              #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl)  #
#                                                                      #
# This R package is free software; you can freely use and distribute   #
# it for both personal and commercial purposes under the terms of the  #
# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
# the Free Software Foundation.                                        #
#                                                                      #
# This R package was created for academic research and was publicly    #
# released in the hope that it will be useful, but it comes WITHOUT    #
# ANY WARRANTY OR LIABILITY.                                           #
# Visit our website for more info: https://msberends.gitab.io/AMR.     #
# ==================================================================== #
*/

// Add updated Font Awesome 5.6.3 library
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// Edit footer
$( document ).ready(function() {

  // redirect to GitLab
  var url_old = window.location.href;
  var url_new = url_old.replace("github", "gitlab");
  if (url_old != url_new) {
    window.location.replace(url_new);
  }

  // PR for 'R for Data Science' on How To pages
  if ($(".template-article").length > 0) {
     $('#sidebar').prepend(
      '<div id="r4ds">' +
      '  <a target="_blank" href="https://r4ds.had.co.nz/">' +
      '    Learn R reading this great book: R for Data Science.' +
      '    <br><br>' +
      '    Click to read it online - it was published for free.' +
      '    <img src="../../AMR/cover_r4ds.png" height="100px">' +
      '  </a>     ' +
      '  <hr>' +
      '</div>');
  }

  $('footer').html(
    '<div>' +
      '<p>' + $('footer .copyright p').html().replace(
        "Developed by",
        '<code>AMR</code> (for R). Developed at the <a href="https://www.rug.nl" target="_blank">University of Groningen</a>.<br>Authors:') + '</p>' +
      '<a href="https://www.rug.nl" target="_blank"><img src="../../AMR/logo_rug.png" class="footer_logo"></a>' +
    '</div>');

  // doctoral titles of authors
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    if (typeof(x) != "undefined") {
      x = x.replace("Corinna", "Dr Corinna");
      x = x.replace("Alex", "Prof Dr Alex");
      x = x.replace("Bhanu", "Prof Dr Bhanu");
      x = x.replace(/Author, thesis advisor/g, "Doctoral advisor");
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    return(x);
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  $(".template-authors").html(doct_tit($(".template-authors").html()));
  $(".developers").html(doct_tit($(".developers").html()));
  $("footer").html(doct_tit($("footer").html()));

  // Edit title of manual
  $('.template-reference-index h1').text('Manual');
});

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