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* Generalise interpretive rules for multi-guideline support (#268) - Rename data-raw/eucast_rules.tsv → interpretive_rules.tsv; add rule.provider column (value: "EUCAST") to distinguish future CLSI rows - Rename EUCAST_RULES_DF → INTERPRETIVE_RULES_DF in _pre_commit_checks.R; filter by rule.provider == guideline when applying rules in interpretive_rules() - Rename custom_eucast_rules() → custom_interpretive_rules() with new S3 class "custom_interpretive_rules"; old function becomes a deprecated wrapper in zz_deprecated.R; backward-compat S3 dispatch shims added for old class - Remove stop_if(guideline == "CLSI", ...) so clsi_rules() no longer errors - Add .onLoad shim in zzz.R to create INTERPRETIVE_RULES_DF from EUCAST_RULES_DF for transitional compatibility until sysdata.rda is regenerated https://claude.ai/code/session_01D46BTsfJSPo3HnLWp3PRkP * Fix namespace load failure: remove assignInNamespace from .onLoad (#268) assignInNamespace cannot add NEW bindings to a locked package namespace (R locks namespace bindings before .onLoad runs). Replace the .onLoad shim with a runtime fallback inside interpretive_rules(): if INTERPRETIVE_RULES_DF is absent (pre-regeneration sysdata.rda), derive it from EUCAST_RULES_DF by adding the rule.provider column. This also fixes the screening_abx line to reuse the already-resolved interpretive_rules_df_total instead of a bare INTERPRETIVE_RULES_DF reference. https://claude.ai/code/session_01D46BTsfJSPo3HnLWp3PRkP * fixes * fixes --------- Co-authored-by: Claude <noreply@anthropic.com>
20 lines
591 B
R
20 lines
591 B
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/zz_deprecated.R
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\name{AMR-deprecated}
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\alias{AMR-deprecated}
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\alias{custom_eucast_rules}
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\alias{ab_class}
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\alias{ab_selector}
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\title{Deprecated Functions, Arguments, or Datasets}
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\usage{
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custom_eucast_rules(...)
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ab_class(...)
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ab_selector(...)
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}
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\description{
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These objects are so-called '\link{Deprecated}'. \strong{They will be removed in a future version of this package.} Using these will give a warning with the name of the alternative object it has been replaced by (if there is one).
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}
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\keyword{internal}
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