mirror of https://github.com/msberends/AMR.git
34 lines
1.1 KiB
R
34 lines
1.1 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/availability.R
|
|
\name{availability}
|
|
\alias{availability}
|
|
\title{Check Availability of Columns}
|
|
\usage{
|
|
availability(tbl, width = NULL)
|
|
}
|
|
\arguments{
|
|
\item{tbl}{a \link{data.frame} or \link{list}}
|
|
|
|
\item{width}{number of characters to present the visual availability - the default is filling the width of the console}
|
|
}
|
|
\value{
|
|
\link{data.frame} with column names of \code{tbl} as row names
|
|
}
|
|
\description{
|
|
Easy check for data availability of all columns in a data set. This makes it easy to get an idea of which antimicrobial combinations can be used for calculation with e.g. \code{\link[=susceptibility]{susceptibility()}} and \code{\link[=resistance]{resistance()}}.
|
|
}
|
|
\details{
|
|
The function returns a \link{data.frame} with columns \code{"resistant"} and \code{"visual_resistance"}. The values in that columns are calculated with \code{\link[=resistance]{resistance()}}.
|
|
}
|
|
\examples{
|
|
availability(example_isolates)
|
|
\donttest{
|
|
if (require("dplyr")) {
|
|
example_isolates \%>\%
|
|
filter(mo == as.mo("Escherichia coli")) \%>\%
|
|
select_if(is.sir) \%>\%
|
|
availability()
|
|
}
|
|
}
|
|
}
|