mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 20:06:12 +01:00
26 lines
759 B
R
26 lines
759 B
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/export_biosample.R
|
|
\name{export_ncbi_biosample}
|
|
\alias{export_ncbi_biosample}
|
|
\title{Export Data Set as NCBI BioSample Antibiogram}
|
|
\usage{
|
|
export_ncbi_biosample(
|
|
x,
|
|
filename = paste0("biosample_", format(Sys.time(), "\%Y-\%m-\%d-\%H\%M\%S"), ".xlsx"),
|
|
type = "pathogen MIC",
|
|
columns = where(is.mic),
|
|
save_as_xlsx = TRUE
|
|
)
|
|
}
|
|
\arguments{
|
|
\item{x}{a data set}
|
|
|
|
\item{filename}{a character string specifying the file name}
|
|
|
|
\item{type}{a character string specifying the type of data set, either "pathogen MIC" or "beta-lactamase MIC", see \url{https://www.ncbi.nlm.nih.gov/biosample/docs/}}
|
|
}
|
|
\description{
|
|
Export Data Set as NCBI BioSample Antibiogram
|
|
}
|
|
\keyword{internal}
|