mirror of https://github.com/msberends/AMR.git
41 lines
2.3 KiB
R
Executable File
41 lines
2.3 KiB
R
Executable File
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/data.R
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\docType{data}
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\name{antibiotics}
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\alias{antibiotics}
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\title{Dataset with 423 antibiotics}
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\format{A data.frame with 423 observations and 18 variables:
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\describe{
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\item{\code{atc}}{ATC code, like \code{J01CR02}}
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\item{\code{certe}}{Certe code, like \code{amcl}}
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\item{\code{umcg}}{UMCG code, like \code{AMCL}}
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\item{\code{abbr}}{Abbreviation as used by many countries, used internally by \code{\link{as.atc}}}
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\item{\code{official}}{Official name by the WHO, like \code{"Amoxicillin and beta-lactamase inhibitor"}}
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\item{\code{official_nl}}{Official name in the Netherlands, like \code{"Amoxicilline met enzymremmer"}}
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\item{\code{trivial_nl}}{Trivial name in Dutch, like \code{"Amoxicilline/clavulaanzuur"}}
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\item{\code{trade_name}}{Trade name as used by many countries (a total of 294), used internally by \code{\link{as.atc}}}
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\item{\code{oral_ddd}}{Defined Daily Dose (DDD), oral treatment}
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\item{\code{oral_units}}{Units of \code{ddd_units}}
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\item{\code{iv_ddd}}{Defined Daily Dose (DDD), parenteral treatment}
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\item{\code{iv_units}}{Units of \code{iv_ddd}}
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\item{\code{atc_group1}}{ATC group, like \code{"Macrolides, lincosamides and streptogramins"}}
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\item{\code{atc_group2}}{Subgroup of \code{atc_group1}, like \code{"Macrolides"}}
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\item{\code{atc_group1_nl}}{ATC group in Dutch, like \code{"Macroliden, lincosamiden en streptograminen"}}
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\item{\code{atc_group2_nl}}{Subgroup of \code{atc_group1} in Dutch, like \code{"Macroliden"}}
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\item{\code{useful_gramnegative}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
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\item{\code{useful_grampositive}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
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}}
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\source{
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- World Health Organization: \url{https://www.whocc.no/atc_ddd_index/} \cr - EUCAST - Expert rules intrinsic exceptional V3.1 \cr - MOLIS (LIS of Certe): \url{https://www.certe.nl} \cr - GLIMS (LIS of UMCG): \url{https://www.umcg.nl}
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}
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\usage{
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antibiotics
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}
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\description{
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A dataset containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDD's. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.
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}
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\seealso{
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\code{\link{microorganisms}}
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}
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\keyword{datasets}
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