AMR/R/globals.R

123 lines
4.4 KiB
R
Executable File

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
globalVariables(c(".",
"..property",
"ab",
"abbreviations",
"antibiotic",
"Antibiotic",
"antibiotics",
"atc",
"authors",
"Becker",
"CNS_CPS",
"cnt",
"col_id",
"count",
"count.x",
"count.y",
"cum_count",
"cum_percent",
"date_lab",
"diff.percent",
"fctlvl",
"First name",
"first_isolate_row_index",
"Freq",
"fullname",
"fullname_lower",
"genus",
"gramstain",
"index",
"input",
"Interpretation",
"item",
"key_ab",
"key_ab_lag",
"key_ab_other",
"kingdom",
"labs",
"Lancefield",
"lang",
"Last name",
"lbl",
"lookup",
"median",
"mic",
"microorganisms",
"microorganisms.codes",
"microorganisms.old",
"microorganisms.oldDT",
"microorganisms.prevDT",
"microorganisms.unprevDT",
"microorganismsDT",
"mo",
"mo.old",
"more_than_episode_ago",
"MPM",
"n",
"name",
"new",
"observations",
"observed",
"official",
"old",
"other_pat_or_mo",
"package_v",
"Pasted",
"patient_id",
"phylum",
"plural",
"prevalence",
"prevalent",
"property",
"psae",
"R",
"real_first_isolate",
"ref",
"reference.rule",
"reference.rule_group",
"rsi",
"rule_group",
"rule_name",
"S",
"se_max",
"se_min",
"septic_patients",
"Sex",
"shortname",
"species",
"species_id",
"subspecies",
"synonyms",
"trade_name",
"trans",
"transmute",
"tsn",
"tsn_new",
"txt",
"value",
"Value",
"x",
"y",
"year"))