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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 19:26:13 +01:00
AMR/R
2024-12-06 15:44:20 +01:00
..
aa_amr-package.R (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
aa_globals.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
aa_helper_functions.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
aa_helper_pm_functions.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
aa_options.R (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
ab_from_text.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
ab_property.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
ab_selectors.R (v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175 2024-12-06 15:44:20 +01:00
ab.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
age.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
antibiogram.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
atc_online.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
av_from_text.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
av_property.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
av.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
availability.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
bug_drug_combinations.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
count.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
custom_antimicrobials.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
custom_eucast_rules.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
custom_microorganisms.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
data.R (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
disk.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
eucast_rules.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
export_biosample.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
first_isolate.R (v2.1.1.9083) update for first_isolate() 2024-09-30 19:13:53 +02:00
g.test.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
get_episode.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
ggplot_pca.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
ggplot_sir.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
guess_ab_col.R (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
italicise_taxonomy.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
join_microorganisms.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
key_antimicrobials.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
kurtosis.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
like.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
mdro.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
mean_amr_distance.R (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
mic.R (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
mo_matching_score.R (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
mo_property.R (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
mo_source.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
mo.R (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
pca.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
plotting.R (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
proportion.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
random.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
resistance_predict.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
sir_calc.R (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
sir_df.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
sir.R add Python package to repo 2024-11-21 10:06:26 +01:00
skewness.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
sysdata.rda (v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175 2024-12-06 15:44:20 +01:00
translate.R (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
vctrs.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
whocc.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
zz_deprecated.R (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
zzz.R (v2.1.1.9073) unit tests 2024-09-19 13:57:36 +02:00