AMR/AMR/__init__.py

from .datasets import example_isolates
from .datasets import microorganisms
from .datasets import antimicrobials
from .datasets import clinical_breakpoints
from .functions import ab_class
from .functions import ab_selector
from .functions import ab_from_text
from .functions import ab_name
from .functions import ab_cid
from .functions import ab_synonyms
from .functions import ab_tradenames
from .functions import ab_group
from .functions import ab_atc
from .functions import ab_atc_group1
from .functions import ab_atc_group2
from .functions import ab_loinc
from .functions import ab_ddd
from .functions import ab_ddd_units
from .functions import ab_info
from .functions import ab_url
from .functions import ab_property
from .functions import add_custom_antimicrobials
from .functions import clear_custom_antimicrobials
from .functions import add_custom_microorganisms
from .functions import clear_custom_microorganisms
from .functions import age
from .functions import age_groups
from .functions import antibiogram
from .functions import wisca
from .functions import retrieve_wisca_parameters
from .functions import aminoglycosides
from .functions import aminopenicillins
from .functions import antifungals
from .functions import antimycobacterials
from .functions import betalactams
from .functions import betalactams_with_inhibitor
from .functions import carbapenems
from .functions import cephalosporins
from .functions import cephalosporins_1st
from .functions import cephalosporins_2nd
from .functions import cephalosporins_3rd
from .functions import cephalosporins_4th
from .functions import cephalosporins_5th
from .functions import fluoroquinolones
from .functions import glycopeptides
from .functions import isoxazolylpenicillins
from .functions import lincosamides
from .functions import lipoglycopeptides
from .functions import macrolides
from .functions import monobactams
from .functions import nitrofurans
from .functions import oxazolidinones
from .functions import penicillins
from .functions import phenicols
from .functions import polymyxins
from .functions import quinolones
from .functions import rifamycins
from .functions import streptogramins
from .functions import sulfonamides
from .functions import tetracyclines
from .functions import trimethoprims
from .functions import ureidopenicillins
from .functions import amr_class
from .functions import amr_selector
from .functions import administrable_per_os
from .functions import administrable_iv
from .functions import not_intrinsic_resistant
from .functions import as_ab
from .functions import is_ab
from .functions import ab_reset_session
from .functions import as_av
from .functions import is_av
from .functions import as_disk
from .functions import is_disk
from .functions import as_mic
from .functions import is_mic
from .functions import rescale_mic
from .functions import mic_p50
from .functions import mic_p90
from .functions import as_mo
from .functions import is_mo
from .functions import mo_uncertainties
from .functions import mo_renamed
from .functions import mo_failures
from .functions import mo_reset_session
from .functions import mo_cleaning_regex
from .functions import as_sir
from .functions import is_sir
from .functions import is_sir_eligible
from .functions import sir_interpretation_history
from .functions import atc_online_property
from .functions import atc_online_groups
from .functions import atc_online_ddd
from .functions import atc_online_ddd_units
from .functions import av_from_text
from .functions import av_name
from .functions import av_cid
from .functions import av_synonyms
from .functions import av_tradenames
from .functions import av_group
from .functions import av_atc
from .functions import av_loinc
from .functions import av_ddd
from .functions import av_ddd_units
from .functions import av_info
from .functions import av_url
from .functions import av_property
from .functions import availability
from .functions import bug_drug_combinations
from .functions import count_resistant
from .functions import count_susceptible
from .functions import count_S
from .functions import count_SI
from .functions import count_I
from .functions import count_IR
from .functions import count_R
from .functions import count_all
from .functions import n_sir
from .functions import count_df
from .functions import custom_eucast_rules
from .functions import eucast_rules
from .functions import eucast_dosage
from .functions import export_ncbi_biosample
from .functions import first_isolate
from .functions import filter_first_isolate
from .functions import g_test
from .functions import is_new_episode
from .functions import ggplot_pca
from .functions import ggplot_sir
from .functions import geom_sir
from .functions import guess_ab_col
from .functions import italicise_taxonomy
from .functions import italicize_taxonomy
from .functions import inner_join_microorganisms
from .functions import left_join_microorganisms
from .functions import right_join_microorganisms
from .functions import full_join_microorganisms
from .functions import semi_join_microorganisms
from .functions import anti_join_microorganisms
from .functions import key_antimicrobials
from .functions import all_antimicrobials
from .functions import kurtosis
from .functions import like
from .functions import mdro
from .functions import custom_mdro_guideline
from .functions import brmo
from .functions import mrgn
from .functions import mdr_tb
from .functions import mdr_cmi2012
from .functions import eucast_exceptional_phenotypes
from .functions import mean_amr_distance
from .functions import amr_distance_from_row
from .functions import mo_matching_score
from .functions import mo_name
from .functions import mo_fullname
from .functions import mo_shortname
from .functions import mo_subspecies
from .functions import mo_species
from .functions import mo_genus
from .functions import mo_family
from .functions import mo_order
from .functions import mo_class
from .functions import mo_phylum
from .functions import mo_kingdom
from .functions import mo_domain
from .functions import mo_type
from .functions import mo_status
from .functions import mo_pathogenicity
from .functions import mo_gramstain
from .functions import mo_is_gram_negative
from .functions import mo_is_gram_positive
from .functions import mo_is_yeast
from .functions import mo_is_intrinsic_resistant
from .functions import mo_oxygen_tolerance
from .functions import mo_is_anaerobic
from .functions import mo_snomed
from .functions import mo_ref
from .functions import mo_authors
from .functions import mo_year
from .functions import mo_lpsn
from .functions import mo_mycobank
from .functions import mo_gbif
from .functions import mo_rank
from .functions import mo_taxonomy
from .functions import mo_synonyms
from .functions import mo_current
from .functions import mo_group_members
from .functions import mo_info
from .functions import mo_url
from .functions import mo_property
from .functions import pca
from .functions import theme_sir
from .functions import labels_sir_count
from .functions import resistance
from .functions import susceptibility
from .functions import sir_confidence_interval
from .functions import proportion_R
from .functions import proportion_IR
from .functions import proportion_I
from .functions import proportion_SI
from .functions import proportion_S
from .functions import proportion_df
from .functions import sir_df
from .functions import random_mic
from .functions import random_disk
from .functions import random_sir
from .functions import resistance_predict
from .functions import sir_predict
from .functions import ggplot_sir_predict
from .functions import skewness
from .functions import top_n_microorganisms
from .functions import reset_AMR_locale
from .functions import translate_AMR