mirror of
https://github.com/msberends/AMR.git
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75 lines
3.3 KiB
YAML
75 lines
3.3 KiB
YAML
# ==================================================================== #
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# TITLE: #
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# AMR: An R Package for Working with Antimicrobial Resistance Data #
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# #
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# SOURCE CODE: #
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# https://github.com/msberends/AMR #
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# #
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# PLEASE CITE THIS SOFTWARE AS: #
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# Berends MS, Luz CF, Friedrich AW, et al. (2022). #
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# AMR: An R Package for Working with Antimicrobial Resistance Data. #
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# Journal of Statistical Software, 104(3), 1-31. #
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# https://doi.org/10.18637/jss.v104.i03 #
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# #
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# Developed at the University of Groningen and the University Medical #
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# Center Groningen in the Netherlands, in collaboration with many #
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# colleagues from around the world, see our website. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://amr-for-r.org #
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# ==================================================================== #
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# Run R CMD check on all CRAN packages that depend on AMR, against the development version of AMR installed from this repository.
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# This is informative only: it is not a required check, so a failure does not block anything, but it shows which reverse dependencies break before a CRAN release.
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on:
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push:
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# only on main
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branches: [main]
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# allow manual runs from the Actions tab
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workflow_dispatch:
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name: check-revdeps
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jobs:
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check-revdeps:
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runs-on: ubuntu-latest
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name: Reverse dependencies (R-release)
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v4
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- uses: r-lib/actions/setup-pandoc@v2
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- uses: r-lib/actions/setup-r@v2
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with:
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r-version: release
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# use RStudio Package Manager to quickly install packages
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
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# AMR has no hard dependencies; pak is used to install the dependencies of the reverse dependencies
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dependencies: '"hard"'
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extra-packages: any::pak
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- name: Install AMR from this repository
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shell: bash
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run: R CMD INSTALL .
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- name: Check reverse dependencies against the installed AMR
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shell: bash
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run: Rscript .github/scripts/check_revdeps.R
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