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12 lines
915 B
R
12 lines
915 B
R
# WHONET fixes
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microorganisms.codes[which(microorganisms.codes$code == "SAP"), "mo"] <- as.mo("staphylococcus")
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microorganisms.codes[which(microorganisms.codes$code == "PAE"), "mo"] <- as.mo("pseudomonas aeruginosa")
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microorganisms.codes[which(microorganisms.codes$code == "ANI"), "mo"] <- as.mo("aspergillus nidulans")
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microorganisms.codes[which(microorganisms.codes$code == "CAL"), "mo"] <- as.mo("candida albicans")
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microorganisms.codes[which(microorganisms.codes$code == "ENT"), "mo"] <- as.mo("enterococcus")
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microorganisms.codes[which(microorganisms.codes$code == "STR"), "mo"] <- as.mo("streptococcus")
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microorganisms.codes[which(microorganisms.codes$code == "CDF"), "mo"] <- as.mo("clostridium difficile")
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microorganisms.codes[which(microorganisms.codes$code == "HA-"), "mo"] <- as.mo("haemophilus influenzae")
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usethis::use_data(microorganisms.codes, overwrite = TRUE, version = 2)
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rm(microorganisms.codes)
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