mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 08:46:11 +01:00
29 lines
1.4 KiB
R
29 lines
1.4 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/data.R
|
|
\docType{data}
|
|
\name{example_isolates_unclean}
|
|
\alias{example_isolates_unclean}
|
|
\title{Data set with unclean data}
|
|
\format{
|
|
A \code{\link{data.frame}} with 3,000 observations and 8 variables:
|
|
\itemize{
|
|
\item \code{patient_id}\cr ID of the patient
|
|
\item \code{date}\cr date of receipt at the laboratory
|
|
\item \code{hospital}\cr ID of the hospital, from A to C
|
|
\item \code{bacteria}\cr info about microorganism that can be transformed with \code{\link[=as.mo]{as.mo()}}, see also \link{microorganisms}
|
|
\item \code{AMX:GEN}\cr 4 different antibiotics that have to be transformed with \code{\link[=as.rsi]{as.rsi()}}
|
|
}
|
|
}
|
|
\usage{
|
|
example_isolates_unclean
|
|
}
|
|
\description{
|
|
A data set containing 3,000 microbial isolates that are not cleaned up and consequently not ready for AMR analysis. This data set can be used for practice.
|
|
}
|
|
\section{Read more on our website!}{
|
|
|
|
On our website \url{https://msberends.github.io/AMR} you can find \href{https://msberends.github.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR analysis, the \href{https://msberends.github.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.github.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
|
|
}
|
|
|
|
\keyword{datasets}
|