mirror of https://github.com/msberends/AMR.git
27 lines
1.4 KiB
R
27 lines
1.4 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/data.R
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\docType{data}
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\name{example_isolates_unclean}
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\alias{example_isolates_unclean}
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\title{Data set with unclean data}
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\format{A \code{\link{data.frame}} with 3,000 observations and 8 variables:
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\itemize{
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\item \code{patient_id}\cr ID of the patient
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\item \code{date}\cr date of receipt at the laboratory
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\item \code{hospital}\cr ID of the hospital, from A to C
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\item \code{bacteria}\cr info about microorganism that can be transformed with \code{\link[=as.mo]{as.mo()}}, see also \link{microorganisms}
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\item \code{AMX:GEN}\cr 4 different antibiotics that have to be transformed with \code{\link[=as.rsi]{as.rsi()}}
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}}
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\usage{
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example_isolates_unclean
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}
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\description{
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A data set containing 3,000 microbial isolates that are not cleaned up and consequently not ready for AMR analysis. This data set can be used for practice.
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}
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\section{Read more on our website!}{
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On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
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}
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\keyword{datasets}
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