mirror of
https://github.com/msberends/AMR.git
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66 lines
2.8 KiB
R
66 lines
2.8 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# AUTHORS #
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# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# LICENCE #
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# This package is free software; you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License version 2.0, #
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# as published by the Free Software Foundation. #
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# #
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# This R package is distributed in the hope that it will be useful, #
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License version 2.0 for more details. #
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# ==================================================================== #
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context("ggplot_rsi.R")
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test_that("ggplot_rsi works", {
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skip_if_not("ggplot2" %in% rownames(installed.packages()))
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library(dplyr)
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library(ggplot2)
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# data should be equal
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expect_equal(
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(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi())$data %>%
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summarise_all(portion_IR) %>% as.double(),
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septic_patients %>% select(amcl, cipr) %>%
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summarise_all(portion_IR) %>% as.double()
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)
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expect_equal(
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(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi(x = "Interpretation", facet = "Antibiotic"))$data %>%
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summarise_all(portion_IR) %>% as.double(),
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septic_patients %>% select(amcl, cipr) %>%
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summarise_all(portion_IR) %>% as.double()
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)
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expect_equal(
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(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi(x = "Antibiotic", facet = "Interpretation"))$data %>%
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summarise_all(portion_IR) %>% as.double(),
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septic_patients %>% select(amcl, cipr) %>%
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summarise_all(portion_IR) %>% as.double()
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)
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expect_equal(
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(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi(x = "Antibiotic",
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facet = "Interpretation",
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fun = count_df))$data %>%
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summarise_all(count_IR) %>% as.double(),
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septic_patients %>% select(amcl, cipr) %>%
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summarise_all(count_IR) %>% as.double()
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)
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expect_equal(colnames(getlbls(septic_patients %>% select(amcl, cipr))),
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c("Interpretation", "Antibiotic", "Value", "lbl"))
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expect_error(ggplot_rsi(septic_patients, fun = "invalid"))
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expect_error(geom_rsi(septic_patients, fun = "invalid"))
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})
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