AMR/R/globals.R

82 lines
3.3 KiB
R
Executable File

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis for R #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2021 Berends MS, Luz CF et al. #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
globalVariables(c(".rowid",
"ab",
"ab_txt",
"angle",
"antibiotic",
"antibiotics",
"atc_group1",
"atc_group2",
"code",
"data",
"fullname",
"fullname_lower",
"g_species",
"genus",
"gr",
"group",
"guideline",
"hjust",
"input",
"intrinsic_resistant",
"isolates",
"lang",
"language",
"lookup",
"method",
"microorganism",
"microorganisms",
"microorganisms.codes",
"microorganisms.old",
"mo",
"name",
"new",
"observations",
"old",
"old_name",
"pattern",
"R",
"reference.rule",
"reference.rule_group",
"reference.version",
"rsi_translation",
"rowid",
"rule_group",
"rule_name",
"se_max",
"se_min",
"species",
"species_id",
"total",
"txt",
"value",
"varname",
"xvar",
"y",
"year",
"yvar"))