mirror of https://github.com/msberends/AMR.git
49 lines
2.8 KiB
R
49 lines
2.8 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/data.R
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\docType{data}
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\name{antibiotics}
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\alias{antibiotics}
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\title{Data set with ~500 antibiotics}
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\format{A \code{\link{data.frame}} with 488 observations and 16 variables:
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\describe{
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\item{\code{atc}}{ATC code, like \code{J01CR02}}
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\item{\code{certe}}{Certe code, like \code{amcl}}
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\item{\code{umcg}}{UMCG code, like \code{AMCL}}
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\item{\code{abbr}}{Abbreviation as used by many countries, used internally by \code{\link{as.atc}}}
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\item{\code{official}}{Official name by the WHO, like \code{"Amoxicillin and beta-lactamase inhibitor"}}
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\item{\code{official_nl}}{Official name in the Netherlands, like \code{"Amoxicilline met enzymremmer"}}
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\item{\code{trivial_nl}}{Trivial name in Dutch, like \code{"Amoxicilline/clavulaanzuur"}}
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\item{\code{trade_name}}{Trade name as used by many countries (a total of 294), used internally by \code{\link{as.atc}}}
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\item{\code{oral_ddd}}{Defined Daily Dose (DDD), oral treatment}
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\item{\code{oral_units}}{Units of \code{ddd_units}}
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\item{\code{iv_ddd}}{Defined Daily Dose (DDD), parenteral treatment}
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\item{\code{iv_units}}{Units of \code{iv_ddd}}
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\item{\code{atc_group1}}{ATC group, like \code{"Macrolides, lincosamides and streptogramins"}}
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\item{\code{atc_group2}}{Subgroup of \code{atc_group1}, like \code{"Macrolides"}}
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\item{\code{useful_gramnegative}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
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\item{\code{useful_grampositive}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
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}}
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\source{
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- World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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EUCAST Expert Rules, Intrinsic Resistance and Exceptional Phenotypes Tables. Version 3.1, 2016: \url{http://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Expert_Rules/Expert_rules_intrinsic_exceptional_V3.1.pdf}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{http://ec.europa.eu/health/documents/community-register/html/atc.htm}
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}
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\usage{
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antibiotics
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}
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\description{
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A data set containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDDs. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.
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}
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\section{Read more on our website!}{
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\if{html}{\figure{logo.png}{options: height=40px style=margin-bottom:5px} \cr}
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On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a omprehensive tutorial} about how to conduct AMR analysis and find \href{https://msberends.gitlab.io/AMR/reference}{the complete documentation of all functions}, which reads a lot easier than in R.
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}
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\seealso{
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\code{\link{microorganisms}}
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}
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\keyword{datasets}
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