dr. M.S. (Matthijs) Berends 1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

..

aa_amr-package.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

aa_globals.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

aa_helper_functions.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

aa_helper_pm_functions.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

aa_options.R

(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA

2024-09-22 11:45:51 +02:00

ab_from_text.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

ab_property.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

ab_selectors.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

ab.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

age.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

antibiogram.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

atc_online.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

av_from_text.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

av_property.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

av.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

availability.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

bug_drug_combinations.R

(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA

2024-09-22 11:45:51 +02:00

count.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

custom_antimicrobials.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

custom_eucast_rules.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

custom_microorganisms.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

data.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

disk.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

eucast_rules.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

export_biosample.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

first_isolate.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

g.test.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

get_episode.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

ggplot_pca.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

ggplot_sir.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

guess_ab_col.R

(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi

2024-09-19 11:44:56 +02:00

italicise_taxonomy.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

join_microorganisms.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

key_antimicrobials.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

kurtosis.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

like.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

mdro.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

mean_amr_distance.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

mic.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

mo_matching_score.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

mo_property.R

(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi

2024-09-19 11:44:56 +02:00

mo_source.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

mo.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

pca.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

plot.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

proportion.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

random.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

resistance_predict.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sir_calc.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sir_df.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sir.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

skewness.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sysdata.rda

(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi

2024-09-19 11:44:56 +02:00

translate.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

vctrs.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

whocc.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

zz_deprecated.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

zzz.R

(v2.1.1.9073) unit tests

2024-09-19 13:57:36 +02:00