AMR/R
dr. M.S. (Matthijs) Berends 2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
..
aa_amr-package.R sort sir history 2023-01-23 15:01:21 +01:00
aa_globals.R bind_rows 2023-02-10 17:09:48 +01:00
aa_helper_functions.R bind_rows 2023-02-10 17:09:48 +01:00
aa_helper_pm_functions.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa_options.R add all options to documentation 2023-01-23 20:07:57 +01:00
ab.R bind_rows 2023-02-10 17:09:48 +01:00
ab_from_text.R documentation, file permissions 2023-01-19 12:54:53 +01:00
ab_property.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
ab_selectors.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
age.R sort sir history 2023-01-23 15:01:21 +01:00
antibiogram.R bind_rows 2023-02-10 17:09:48 +01:00
atc_online.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
av.R bind_rows 2023-02-10 17:09:48 +01:00
av_from_text.R sort sir history 2023-01-23 15:01:21 +01:00
av_property.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
availability.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
bug_drug_combinations.R bind_rows 2023-02-10 17:09:48 +01:00
count.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
custom_antimicrobials.R bind_rows 2023-02-10 17:09:48 +01:00
custom_eucast_rules.R sort sir history 2023-01-23 15:01:21 +01:00
custom_microorganisms.R bind_rows 2023-02-10 17:09:48 +01:00
data.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
disk.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
eucast_rules.R bind_rows 2023-02-10 17:09:48 +01:00
first_isolate.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
g.test.R prelim fix for g.test 2023-01-30 12:26:48 +01:00
get_episode.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
ggplot_pca.R sort sir history 2023-01-23 15:01:21 +01:00
ggplot_sir.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
guess_ab_col.R sort sir history 2023-01-23 15:01:21 +01:00
italicise_taxonomy.R sort sir history 2023-01-23 15:01:21 +01:00
join_microorganisms.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
key_antimicrobials.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
kurtosis.R support new mo codes 2022-12-27 15:16:15 +01:00
like.R support new mo codes 2022-12-27 15:16:15 +01:00
mdro.R sort sir history 2023-01-23 15:01:21 +01:00
mean_amr_distance.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
mic.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
mo.R bind_rows 2023-02-10 17:09:48 +01:00
mo_matching_score.R sort sir history 2023-01-23 15:01:21 +01:00
mo_property.R fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
mo_source.R add all options to documentation 2023-01-23 20:07:57 +01:00
pca.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
plot.R bind_rows 2023-02-10 17:09:48 +01:00
proportion.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
random.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
resistance_predict.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
sir.R bind_rows 2023-02-10 17:09:48 +01:00
sir_calc.R bind_rows 2023-02-10 17:09:48 +01:00
sir_df.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
skewness.R support new mo codes 2022-12-27 15:16:15 +01:00
sysdata.rda use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
translate.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
vctrs.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
whocc.R support new mo codes 2022-12-27 15:16:15 +01:00
zz_deprecated.R documentation, unit tests 2023-01-24 10:20:27 +01:00
zzz.R bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00