mirror of https://github.com/msberends/AMR.git
32 lines
1.4 KiB
R
Executable File
32 lines
1.4 KiB
R
Executable File
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/data.R
|
|
\docType{data}
|
|
\name{microorganisms}
|
|
\alias{microorganisms}
|
|
\title{Dataset with ~2500 microorganisms}
|
|
\format{A data.frame with 2456 observations and 12 variables:
|
|
\describe{
|
|
\item{\code{bactid}}{ID of microorganism}
|
|
\item{\code{bactsys}}{Bactsyscode of microorganism}
|
|
\item{\code{family}}{Family name of microorganism}
|
|
\item{\code{genus}}{Genus name of microorganism, like \code{"Echerichia"}}
|
|
\item{\code{species}}{Species name of microorganism, like \code{"coli"}}
|
|
\item{\code{subspecies}}{Subspecies name of bio-/serovar of microorganism, like \code{"EHEC"}}
|
|
\item{\code{fullname}}{Full name, like \code{"Echerichia coli (EHEC)"}}
|
|
\item{\code{type}}{Type of microorganism, like \code{"Bacteria"} and \code{"Fungus/yeast"}}
|
|
\item{\code{gramstain}}{Gram of microorganism, like \code{"Negative rods"}}
|
|
\item{\code{aerobic}}{Logical whether bacteria is aerobic}
|
|
\item{\code{type_nl}}{Type of microorganism in Dutch, like \code{"Bacterie"} and \code{"Schimmel/gist"}}
|
|
\item{\code{gramstain_nl}}{Gram of microorganism in Dutch, like \code{"Negatieve staven"}}
|
|
}}
|
|
\usage{
|
|
microorganisms
|
|
}
|
|
\description{
|
|
A dataset containing 2456 microorganisms. MO codes of the UMCG can be looked up using \code{\link{microorganisms.umcg}}.
|
|
}
|
|
\seealso{
|
|
\code{\link{guess_bactid}} \code{\link{antibiotics}} \code{\link{microorganisms.umcg}}
|
|
}
|
|
\keyword{datasets}
|