mirror of
https://github.com/msberends/AMR.git
synced 2024-12-27 08:06:13 +01:00
22 lines
606 B
R
Executable File
22 lines
606 B
R
Executable File
context("mdro.R")
|
|
|
|
|
|
test_that("MDRO works", {
|
|
library(dplyr)
|
|
|
|
outcome <- MDRO(septic_patients, "EUCAST", info = FALSE)
|
|
# check class
|
|
expect_equal(outcome %>% class(), c('ordered', 'factor'))
|
|
|
|
outcome <- MDRO(septic_patients, "nl", info = FALSE)
|
|
# check class
|
|
expect_equal(outcome %>% class(), c('ordered', 'factor'))
|
|
|
|
# septic_patients should have these finding using Dutch guidelines
|
|
expect_equal(outcome %>% freq() %>% pull(count),
|
|
c(2, 14)) # 2 unconfirmed, 14 positive
|
|
|
|
expect_equal(BRMO(septic_patients, info = FALSE), MDRO(septic_patients, "nl", info = FALSE))
|
|
|
|
})
|