mirror of https://github.com/msberends/AMR.git
46 lines
1.3 KiB
R
46 lines
1.3 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/disk.R
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\name{as.disk}
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\alias{as.disk}
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\alias{disk}
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\alias{is.disk}
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\title{Class 'disk'}
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\usage{
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as.disk(x, na.rm = FALSE)
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is.disk(x)
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}
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\arguments{
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\item{x}{vector}
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\item{na.rm}{a logical indicating whether missing values should be removed}
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}
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\value{
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Ordered integer factor with new class \code{disk}
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}
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\description{
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This transforms a vector to a new class \code{disk}, which is a growth zone size (around an antibiotic disk) in millimeters between 6 and 99.
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}
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\details{
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Interpret disk values as RSI values with \code{\link{as.rsi}}. It supports guidelines from EUCAST and CLSI.
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}
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\section{Read more on our website!}{
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On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
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}
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\examples{
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# interpret disk values
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as.rsi(x = 12,
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mo = as.mo("S. pneumoniae"),
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ab = "AMX",
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guideline = "EUCAST")
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as.rsi(x = 12,
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mo = as.mo("S. pneumoniae"),
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ab = "AMX",
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guideline = "CLSI")
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}
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\seealso{
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\code{\link{as.rsi}}
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}
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