mirror of https://github.com/msberends/AMR.git
72 lines
2.6 KiB
R
72 lines
2.6 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/freq.R
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\name{freq}
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\alias{freq}
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\alias{frequency_tbl}
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\title{Frequency table}
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\usage{
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freq(x, sort.count = TRUE, nmax = 15, na.rm = TRUE, markdown = FALSE,
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toConsole = TRUE, digits = 2, sep = " ")
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frequency_tbl(x, sort.count = TRUE, nmax = 15, na.rm = TRUE,
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markdown = FALSE, toConsole = TRUE, digits = 2, sep = " ")
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}
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\arguments{
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\item{x}{data}
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\item{sort.count}{Sort on count. Use \code{FALSE} to sort alphabetically on item.}
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\item{nmax}{number of row to print. Use \code{nmax = 0} or \code{nmax = NA} to print all rows.}
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\item{na.rm}{a logical value indicating whether NA values should be removed from the frequency table. The header will always print the amount of\code{NA}s.}
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\item{markdown}{print table in markdown format (this forces \code{nmax = NA})}
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\item{toConsole}{Print table to the console. Use \code{FALSE} to assign the table to an object.}
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\item{digits}{how many significant digits are to be used for numeric values (not for the items themselves, that depends on \code{\link{getOption}("digits")})}
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\item{sep}{a character string to separate the terms when selecting multiple columns}
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}
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\description{
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Create a frequency table of a vector of data, a single column or a maximum of 9 columns of a data frame. Supports markdown for reports.
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}
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\details{
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For numeric values, the next values will be calculated and shown into the header:
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\itemize{
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\item{Mean, using \code{\link[base]{mean}}}
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\item{Standard deviation, using \code{\link[stats]{sd}}}
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\item{Five numbers of Tukey (min, Q1, median, Q3, max), using \code{\link[stats]{fivenum}}}
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\item{Outliers (count and list), using \code{\link{boxplot.stats}}}
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\item{Coefficient of variation (CV), the standard deviation divided by the mean}
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\item{Coefficient of quartile variation (CQV, sometimes called coefficient of dispersion), calculated as \code{(Q3 - Q1) / (Q3 + Q1)} using \code{\link{quantile}} with \code{type = 6} as quantile algorithm to comply with SPSS standards}
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}
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}
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\examples{
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library(dplyr)
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freq(septic_patients$hospital_id)
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septic_patients \%>\%
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filter(hospital_id == "A") \%>\%
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select(bactid) \%>\%
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freq()
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# select multiple columns; they will be pasted together
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septic_patients \%>\%
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left_join_microorganisms \%>\%
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filter(hospital_id == "A") \%>\%
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select(genus, species) \%>\%
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freq()
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# save frequency table to an object
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years <- septic_patients \%>\%
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mutate(year = format(date, "\%Y")) \%>\%
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select(year) \%>\%
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freq(toConsole = FALSE)
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}
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\keyword{freq}
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\keyword{frequency}
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\keyword{summarise}
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\keyword{summary}
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