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42 lines
2.0 KiB
R
42 lines
2.0 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/data.R
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\docType{data}
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\name{intrinsic_resistant}
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\alias{intrinsic_resistant}
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\title{Data Set Denoting Bacterial Intrinsic Resistance}
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\format{
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A \link[tibble:tibble]{tibble} with 271 905 observations and 2 variables:
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\itemize{
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\item \code{mo}\cr Microorganism ID which occurs in \code{\link[=microorganisms]{microorganisms$mo}}. Names can be retrieved using \code{\link[=mo_name]{mo_name()}}.
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\item \code{ab}\cr Antimicrobial ID which occurs in \code{\link[=antimicrobials]{antimicrobials$ab}}. Names can be retrieved using \code{\link[=ab_name]{ab_name()}}.
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}
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}
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\usage{
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intrinsic_resistant
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}
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\description{
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Data set containing 'EUCAST Expected Resistant Phenotypes' of \emph{all} bug-drug combinations between the \link{microorganisms} and \link{antimicrobials} data sets.
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}
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\details{
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This data set is currently based on \href{https://www.eucast.org/expert_rules_and_expected_phenotypes}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023).
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This data set is internally used by:
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\itemize{
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\item \code{\link[=not_intrinsic_resistant]{not_intrinsic_resistant()}} (an \link[=antimicrobial_selectors]{antimicrobial selector})
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\item \code{\link[=mo_is_intrinsic_resistant]{mo_is_intrinsic_resistant()}}
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}
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}
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\section{Download Our Reference Data}{
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All reference data sets in the AMR package - including information on microorganisms, antimicrobials, and clinical breakpoints - are freely available for download in multiple formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata.
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For maximum compatibility, we also provide machine-readable, tab-separated plain text files suitable for use in any software, including laboratory information systems.
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Visit \href{https://amr-for-r.org/articles/datasets.html}{our website for direct download links}, or explore the actual files in \href{https://github.com/msberends/AMR/tree/main/data-raw}{our GitHub repository}.
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}
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\examples{
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intrinsic_resistant
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}
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\keyword{datasets}
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