mirror of https://github.com/msberends/AMR.git
60 lines
3.1 KiB
R
Executable File
60 lines
3.1 KiB
R
Executable File
# ==================================================================== #
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# TITLE #
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# Antidiskrobial Resistance (AMR) Analysis #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# CITE AS #
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# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
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# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
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# Data. Journal of Statistical Software, 104(3), 1-31. #
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# https://doi.org/10.18637/jss.v104.i03 #
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# #
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# Developed at the University of Groningen and the University Medical #
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# Center Groningen in The Netherlands, in collaboration with many #
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# colleagues from around the world, see our website. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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expect_true(as.disk(8) == as.disk("8"))
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expect_true(is.disk(as.disk(8)))
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expect_equal(suppressWarnings(as.logical(as.disk("INVALID VALUE"))), NA)
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# all levels should be valid disks
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x <- as.disk(c(20, 40))
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expect_inherits(x[1], "disk")
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expect_inherits(x[[1]], "disk")
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expect_inherits(c(x[1], x[9]), "disk")
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expect_inherits(unique(x[1], x[9]), "disk")
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# expect_warning(as.disk("INVALID VALUE"))
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x[2] <- 32
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expect_inherits(x, "disk")
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pdf(NULL) # prevent Rplots.pdf being created
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expect_silent(barplot(as.disk(c(10, 20, 40))))
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expect_silent(plot(as.disk(c(10, 20, 40))))
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expect_silent(plot(as.disk(c(10, 20, 40)), expand = FALSE))
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expect_silent(plot(as.disk(c(10, 20, 40)), mo = "Escherichia coli", ab = "cipr"))
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if (AMR:::pkg_is_available("ggplot2")) {
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expect_inherits(ggplot2::autoplot(as.disk(c(10, 20, 40))), "gg")
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expect_inherits(ggplot2::autoplot(as.disk(c(10, 20, 40)), expand = FALSE), "gg")
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expect_inherits(ggplot2::autoplot(as.disk(c(10, 20, 40)), mo = "Escherichia coli", ab = "cipr"), "gg")
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}
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expect_stdout(print(as.disk(12)))
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if (AMR:::pkg_is_available("tibble")) {
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expect_stdout(print(tibble::tibble(d = as.disk(12))))
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}
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