mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 06:46:11 +01:00
48 lines
2.4 KiB
R
Executable File
48 lines
2.4 KiB
R
Executable File
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Data Analysis for R #
|
|
# #
|
|
# SOURCE #
|
|
# https://github.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2018-2021 Berends MS, Luz CF et al. #
|
|
# Developed at the University of Groningen, the Netherlands, in #
|
|
# collaboration with non-profit organisations Certe Medical #
|
|
# Diagnostics & Advice, and University Medical Center Groningen. #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# We created this package for both routine data analysis and academic #
|
|
# research and it was publicly released in the hope that it will be #
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
|
# #
|
|
# Visit our website for the full manual and a complete tutorial about #
|
|
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
|
# ==================================================================== #
|
|
|
|
#' Deprecated Functions
|
|
#'
|
|
#' These functions are so-called '[Deprecated]'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
|
|
#' @inheritSection lifecycle Retired Lifecycle
|
|
#' @inheritSection AMR Read more on Our Website!
|
|
#' @keywords internal
|
|
#' @name AMR-deprecated
|
|
#' @export
|
|
p_symbol <- function(p, emptychar = " ") {
|
|
.Deprecated(package = "AMR", new = "cleaner::p_symbol")
|
|
|
|
p <- as.double(p)
|
|
s <- rep(NA_character_, length(p))
|
|
|
|
s[p <= 1] <- emptychar
|
|
s[p <= 0.100] <- "."
|
|
s[p <= 0.050] <- "*"
|
|
s[p <= 0.010] <- "**"
|
|
s[p <= 0.001] <- "***"
|
|
|
|
s
|
|
}
|