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https://github.com/msberends/AMR.git
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dr. M.S. (Matthijs) Berends
53464ff1c8
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore) - Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS - Renamed dataset `bactlist` to `microorganisms`
46 lines
1.3 KiB
R
46 lines
1.3 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/atc.R
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\name{abname}
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\alias{abname}
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\title{Name of an antibiotic}
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\source{
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\code{\link{antibiotics}}
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}
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\usage{
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abname(abcode, from = c("guess", "atc", "molis", "umcg"), to = "official",
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textbetween = " + ", tolower = FALSE)
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}
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\arguments{
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\item{abcode}{a code or name, like \code{"AMOX"}, \code{"AMCL"} or \code{"J01CA04"}}
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\item{from, to}{type to transform from and to. See \code{\link{antibiotics}} for its column names. WIth \code{from = "guess"} the from will be guessed from \code{"atc"}, \code{"molis"} and \code{"umcg"}.}
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\item{textbetween}{text to put between multiple returned texts}
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\item{tolower}{return output as lower case with function \code{\link{tolower}}.}
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}
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\description{
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Convert antibiotic codes (from a laboratory information system like MOLIS or GLIMS) to a (trivial) antibiotic name or ATC code, or vice versa. This uses the data from \code{\link{antibiotics}}.
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}
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\examples{
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abname("AMCL")
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# "amoxicillin and enzyme inhibitor"
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abname("AMCL+GENT")
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# "amoxicillin and enzyme inhibitor + gentamicin"
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abname(c("AMCL", "GENT"))
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# "amoxicillin and enzyme inhibitor" "gentamicin"
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abname("AMCL", to = "trivial_nl")
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# "Amoxicilline/clavulaanzuur"
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abname("AMCL", to = "atc")
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# "J01CR02"
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abname("J01CR02", from = "atc", to = "umcg")
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# "AMCL"
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}
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\keyword{ab}
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\keyword{antibiotics}
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