mirror of https://github.com/msberends/AMR.git
29 lines
1.6 KiB
Plaintext
29 lines
1.6 KiB
Plaintext
## 0.1.2
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- Added full support for Windows, Linux and macOS
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- New function `guess_bactid` to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA
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- New functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
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- New algorithm to determine weighted isolates, can now be `"points"` or `"keyantibiotics"`, see `?first_isolate`
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- Renamed dataset `ablist` to `antibiotics`
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- Renamed dataset `bactlist` to `microorganisms`
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- Added more microorganisms to `bactlist`
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- Added analysis examples on help page of dataset `septic_patients`
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- Added support for character vector in join functions
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- Added warnings when applying a join results in more rows after than before the join
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- Altered `%like%` to make it case insensitive
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- For parameters of functions `first_isolate`, `EUCAST_rules` the column names are now case-insensitive
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- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
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- Expanded README.md
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- Added unit testing with the `testthat` package
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- Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
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- Added Line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)
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## 0.1.1
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- `EUCAST_rules` applies for amoxicillin even if ampicillin is missing
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- Edited column names to comply with GLIMS, the laboratory information system
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- Added more valid MIC values
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- Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
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- Added barplots for `rsi` and `mic` classes
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## 0.1.0
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- First submission to CRAN.
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