mirror of https://github.com/msberends/AMR.git
78 lines
2.6 KiB
R
Executable File
78 lines
2.6 KiB
R
Executable File
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/atc.R
|
|
\name{atc_property}
|
|
\alias{atc_property}
|
|
\alias{atc_groups}
|
|
\alias{atc_ddd}
|
|
\title{Properties of an ATC code}
|
|
\source{
|
|
\url{https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/}
|
|
}
|
|
\usage{
|
|
atc_property(atc_code, property, administration = "O",
|
|
url = "https://www.whocc.no/atc_ddd_index/?code=\%s&showdescription=no")
|
|
|
|
atc_groups(atc_code, ...)
|
|
|
|
atc_ddd(atc_code, ...)
|
|
}
|
|
\arguments{
|
|
\item{atc_code}{a character or character vector with ATC code(s) of antibiotic(s)}
|
|
|
|
\item{property}{property of an ATC code. Valid values are \code{"ATC"}, \code{"Name"}, \code{"DDD"}, \code{"U"} (\code{"unit"}), \code{"Adm.R"}, \code{"Note"} and \code{groups}. For this last option, all hierarchical groups of an ATC code will be returned, see Examples.}
|
|
|
|
\item{administration}{type of administration when using \code{property = "Adm.R"}, see Details}
|
|
|
|
\item{url}{url of website of the WHO. The sign \code{\%s} can be used as a placeholder for ATC codes.}
|
|
|
|
\item{...}{parameters to pass on to \code{atc_property}}
|
|
}
|
|
\description{
|
|
Gets data from the WHO to determine properties of an ATC (e.g. an antibiotic) like name, defined daily dose (DDD) or standard unit. \cr \strong{This function requires an internet connection.}
|
|
}
|
|
\details{
|
|
Options for parameter \code{administration}:
|
|
\itemize{
|
|
\item{\code{"Implant"}}{ = Implant}
|
|
\item{\code{"Inhal"}}{ = Inhalation}
|
|
\item{\code{"Instill"}}{ = Instillation}
|
|
\item{\code{"N"}}{ = nasal}
|
|
\item{\code{"O"}}{ = oral}
|
|
\item{\code{"P"}}{ = parenteral}
|
|
\item{\code{"R"}}{ = rectal}
|
|
\item{\code{"SL"}}{ = sublingual/buccal}
|
|
\item{\code{"TD"}}{ = transdermal}
|
|
\item{\code{"V"}}{ = vaginal}
|
|
}
|
|
|
|
Abbreviations of return values when using \code{property = "U"} (unit):
|
|
\itemize{
|
|
\item{\code{"g"}}{ = gram}
|
|
\item{\code{"mg"}}{ = milligram}
|
|
\item{\code{"mcg"}}{ = microgram}
|
|
\item{\code{"U"}}{ = unit}
|
|
\item{\code{"TU"}}{ = thousand units}
|
|
\item{\code{"MU"}}{ = million units}
|
|
\item{\code{"mmol"}}{ = millimole}
|
|
\item{\code{"ml"}}{ = milliliter (e.g. eyedrops)}
|
|
}
|
|
}
|
|
\examples{
|
|
\donttest{
|
|
# What's the ATC of amoxicillin?
|
|
guess_atc("Amoxicillin")
|
|
# [1] "J01CA04"
|
|
|
|
# oral DDD (Defined Daily Dose) of amoxicillin
|
|
atc_property("J01CA04", "DDD", "O")
|
|
# parenteral DDD (Defined Daily Dose) of amoxicillin
|
|
atc_property("J01CA04", "DDD", "P")
|
|
|
|
atc_property("J01CA04", property = "groups") # search hierarchical groups of amoxicillin
|
|
# [1] "ANTIINFECTIVES FOR SYSTEMIC USE"
|
|
# [2] "ANTIBACTERIALS FOR SYSTEMIC USE"
|
|
# [3] "BETA-LACTAM ANTIBACTERIALS, PENICILLINS"
|
|
# [4] "Penicillins with extended spectrum"
|
|
}
|
|
}
|