mirror of https://github.com/msberends/AMR.git
26 lines
1.1 KiB
R
26 lines
1.1 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/rsi.R
|
|
\name{rsi}
|
|
\alias{rsi}
|
|
\title{Calculate resistance of isolates}
|
|
\usage{
|
|
rsi(ab1, ab2 = NULL, interpretation = "IR", minimum = 30,
|
|
as_percent = FALSE, ...)
|
|
}
|
|
\arguments{
|
|
\item{ab1}{vector of antibiotic interpretations, they will be transformed internally with \code{\link{as.rsi}} if needed}
|
|
|
|
\item{ab2}{like \code{ab}, a vector of antibiotic interpretations. Use this to calculate (the lack of) co-resistance: the probability where one of two drugs have a resistant or susceptible result. See Examples.}
|
|
|
|
\item{interpretation}{antimicrobial interpretation to check for}
|
|
|
|
\item{minimum}{minimal amount of available isolates. Any number lower than \code{minimum} will return \code{NA}. The default number of \code{30} isolates is advised by the CLSI as best practice, see Source.}
|
|
|
|
\item{as_percent}{logical to indicate whether the output must be returned as percent (text), will else be a double}
|
|
|
|
\item{...}{deprecated parameters to support usage on older versions}
|
|
}
|
|
\description{
|
|
This function is deprecated. Use the \code{\link{portion}} functions instead.
|
|
}
|