mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 20:06:12 +01:00
46 lines
1.2 KiB
R
46 lines
1.2 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/atc.R
|
|
\name{abname}
|
|
\alias{abname}
|
|
\title{Name of an antibiotic}
|
|
\source{
|
|
\code{\link{ablist}}
|
|
}
|
|
\usage{
|
|
abname(abcode, from = "umcg", to = "official", textbetween = " + ",
|
|
tolower = FALSE)
|
|
}
|
|
\arguments{
|
|
\item{abcode}{a code or name, like \code{"AMOX"}, \code{"AMCL"} or \code{"J01CA04"}}
|
|
|
|
\item{from, to}{type to transform from and to. See \code{\link{ablist}} for its column names.}
|
|
|
|
\item{textbetween}{text to put between multiple returned texts}
|
|
|
|
\item{tolower}{return output as lower case with function \code{\link{tolower}}.}
|
|
}
|
|
\description{
|
|
Convert antibiotic codes (from a laboratory information system like MOLIS or GLIMS) to a (trivial) antibiotic name or ATC code, or vice versa. This uses the data from \code{\link{ablist}}.
|
|
}
|
|
\examples{
|
|
abname("AMCL")
|
|
# "amoxicillin and enzyme inhibitor"
|
|
|
|
abname("AMCL+GENT")
|
|
# "amoxicillin and enzyme inhibitor + gentamicin"
|
|
|
|
abname(c("AMCL", "GENT"))
|
|
# "amoxicillin and enzyme inhibitor" "gentamicin"
|
|
|
|
abname("AMCL", to = "trivial_nl")
|
|
# "Amoxicilline/clavulaanzuur"
|
|
|
|
abname("AMCL", to = "atc")
|
|
# "J01CR02"
|
|
|
|
abname("J01CR02", from = "atc", to = "umcg")
|
|
# "AMCL"
|
|
}
|
|
\keyword{ab}
|
|
\keyword{antibiotics}
|