AMR/R/globals.R

68 lines
2.6 KiB
R
Executable File

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# AUTHORS #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# LICENCE #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0, #
# as published by the Free Software Foundation. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# ==================================================================== #
globalVariables(c('abname',
'antibiotic',
'antibiotics',
'atc',
'bactid',
'C_chisq_sim',
'cnt',
'count',
'counts',
'cum_count',
'cum_percent',
'date_lab',
'days_diff',
'fctlvl',
'first_isolate_row_index',
'Freq',
'fullname',
'genus',
'gramstain',
'item',
'key_ab',
'key_ab_lag',
'key_ab_other',
'labs',
'median',
'mic',
'MIC',
'microorganisms',
'mocode',
'molis',
'n',
'na.omit',
'observations',
'official',
'other_pat_or_mo',
'Pasted',
'patient_id',
'quantile',
'R',
'real_first_isolate',
'S',
'septic_patients',
'species',
'umcg',
'value',
'values',
'View',
'y',
'.'))