mirror of https://github.com/msberends/AMR.git
86 lines
2.6 KiB
R
Executable File
86 lines
2.6 KiB
R
Executable File
context("freq.R")
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test_that("frequency table works", {
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expect_equal(nrow(freq(c(1, 1, 2, 2, 3, 3, 4, 4, 5, 5))), 5)
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expect_equal(nrow(frequency_tbl(c(1, 1, 2, 2, 3, 3, 4, 4, 5, 5))), 5)
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# date column of septic_patients should contain 1151 unique dates
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expect_equal(nrow(freq(septic_patients$date)), 1151)
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expect_equal(nrow(freq(septic_patients$date)),
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length(unique(septic_patients$date)))
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# character
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expect_output(print(freq(septic_patients$bactid)))
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# integer
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expect_output(print(freq(septic_patients$age)))
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# date
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expect_output(print(freq(septic_patients$date)))
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# factor
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expect_output(print(freq(septic_patients$hospital_id)))
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# table
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expect_output(print(freq(table(septic_patients$sex, septic_patients$age))))
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library(dplyr)
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expect_output(septic_patients %>% select(1:2) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:3) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:4) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:5) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:6) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:7) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:8) %>% freq() %>% print())
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expect_output(septic_patients %>% select(1:9) %>% freq() %>% print())
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# top 5
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expect_equal(
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septic_patients %>%
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freq(bactid) %>%
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top_freq(5) %>%
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length(),
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5)
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# there're more than 5 lowest values
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expect_gt(
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septic_patients %>%
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freq(bactid) %>%
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top_freq(-5) %>%
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length(),
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5)
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# n has length > 1
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expect_error(
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septic_patients %>%
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freq(bactid) %>%
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top_freq(n = c(1, 2))
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)
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# input must be freq tbl
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expect_error(septic_patients %>% top_freq(1))
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# charts from plot and hist, should not raise errors
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plot(freq(septic_patients, age))
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hist(freq(septic_patients, age))
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# check vector
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expect_identical(septic_patients %>%
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freq(age) %>%
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as.vector() %>%
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sort(),
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septic_patients %>%
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pull(age) %>%
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sort())
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# check format
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expect_identical(septic_patients %>%
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freq(age) %>%
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format() %>%
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apply(2, class) %>%
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unname(),
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rep("character", 5))
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# check tibble
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expect_identical(septic_patients %>%
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freq(age) %>%
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as_tibble() %>%
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class() %>%
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.[1],
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"tbl_df")
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})
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