mirror of
https://github.com/msberends/AMR.git
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126 lines
6.9 KiB
JavaScript
126 lines
6.9 KiB
JavaScript
/*
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# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Data Analysis for R #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2018-2022 Berends MS, Luz CF et al. #
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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*/
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// Add updated Font Awesome 5.8.2 library
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$('head').append('<!-- Updated Font Awesome library --><link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.2/css/all.css">');
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$(document).ready(function() {
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// remove version label from header
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$(".version.label").remove();
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// redirect GitLab to GitHub
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var url_old = window.location.href;
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var url_new = url_old.replace("gitlab", "github");
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if (url_old != url_new) {
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window.location.replace(url_new);
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}
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// Edit title of manual
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$('.template-reference-index h1').text('Manual');
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// replace 'Value' in manual with 'Returned value'
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$(".template-reference-topic h2#value").text("Returned value");
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// replace \donttest and \dontrun texts in Examples
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if ($(".ref-examples pre").length > 0) {
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$(".ref-examples pre").html($(".ref-examples pre").html().replaceAll("# \\donttest{", ""));
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$(".ref-examples pre").html($(".ref-examples pre").html().replaceAll("# \\dontrun{", ""));
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$(".ref-examples pre").html($(".ref-examples pre").html().replaceAll("# }", ""));
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}
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// remove leading newline in code examples on changelog
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if ($("body .template-news").length > 0) {
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$("body .template-news").html($("body .template-news").html().replaceAll('sourceCode R">\n<span', 'sourceCode R"><span'));
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}
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// change H1 header on dev version on changelog, since pkgdown uses the version number from the installed version
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// (rather then using the DESCRIPTION file)
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$("h1[id^=unreleased]").text("Current development version");
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// PR for 'R for Data Science' on How To pages
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if ($(".template-article").length > 0) {
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$('#pkgdown-sidebar').prepend(
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'<div id="r4ds">' +
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' <div class="txt">' +
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' <p>' +
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' Learn R reading this great book: <i>R for Data Science</i>.' +
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' <br><br>' +
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' <a target="_blank" href="https://r4ds.had.co.nz/">' +
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' Click to read it online - it was published for free.' +
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' </a>' +
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' </p>' +
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' </div>' +
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' <div class="img">' +
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' <a target="_blank" href="https://r4ds.had.co.nz/">' +
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' <img src="https://github.com/msberends/AMR/raw/main/docs/cover_r4ds.png">' +
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' </a>' +
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' </div>' +
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'</div>');
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}
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// edit footer
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$('footer').html(
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'<div>' +
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'<p><code>AMR</code> (for R). Developed at the <a target="_blank" href="https://www.rug.nl">University of Groningen</a> in collaboration with non-profit organisations<br><a target="_blank" href="https://www.certe.nl">Certe Medical Diagnostics and Advice Foundation</a> and <a target="_blank" href="https://www.umcg.nl">University Medical Center Groningen</a>.</p>' +
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'<a target="_blank" href="https://www.rug.nl"><img src="https://github.com/msberends/AMR/raw/main/docs/logo_rug.png" class="footer_logo"></a>' +
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'</div>');
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// doctoral titles of authors
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function doct_tit(x) {
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if (typeof(x) != "undefined") {
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// authors
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x = x.replace(/Author, maintainer/g, "Maintainer");
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x = x.replace(/Author, contributor/g, "Maintainer");
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x = x.replace(/Author, thesis advisor/g, "Doctoral advisor");
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x = x.replace(/Thesis advisor/g, "Doctoral advisor");
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x = x.replace("Matthijs", "Dr Matthijs");
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x = x.replace("Christian", "Dr Christian");
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x = x.replace("Alex", "Prof. Alex");
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x = x.replace("Bhanu", "Prof. Bhanu");
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x = x.replace("Casper", "Prof. Casper");
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x = x.replace("Corinna", "Dr Corinna");
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// others
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x = x.replace("Bart", "Dr Bart");
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x = x.replace("Sofia", "Dr Sofia");
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x = x.replace("Dennis", "Dr Dennis");
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x = x.replace("Judith", "Dr Judith");
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x = x.replace("Gwen", "Dr Gwen");
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x = x.replace("Anthony", "Dr Anthony");
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x = x.replace("Rogier", "Dr Rogier");
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}
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return(x);
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}
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$(".template-authors").html(doct_tit($(".template-authors").html()));
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$(".template-citation-authors").html(doct_tit($(".template-citation-authors").html()));
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$('.template-citation-authors h1').eq(0).html("All contributors of the <code>AMR</code> package");
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$('.template-citation-authors h1').eq(1).html("How to cite the <code>AMR</code> package");
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$(".developers").html(doct_tit($(".developers").html()));
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$(".developers a[href='authors.html']").text("All contributors...");
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});
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$('head').append("<!-- Global site tag (gtag.js) - Google Analytics --> <script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-172114740-1\"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-172114740-1'); </script><!-- Matomo --><script type='text/javascript'> var _paq = _paq || []; /* tracker methods like 'setCustomDimension' should be called before 'trackPageView' */ _paq.push(['setDomains', ['*.msberends.github.io/AMR']]); _paq.push(['enableCrossDomainLinking']); _paq.push(['trackPageView']); _paq.push(['enableLinkTracking']); (function() { var u='https://analyse.uscloud.nl/'; _paq.push(['setTrackerUrl', u+'piwik.php']); _paq.push(['setSiteId', '3']); var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0]; g.type='text/javascript'; g.async=true; g.defer=true; g.src=u+'piwik.js'; s.parentNode.insertBefore(g,s); })();</script><!-- End Matomo Code -->");
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