AMR/data-raw
dr. M.S. (Matthijs) Berends 3d9faf89cf ATC and DDD update 2022-10-29 19:01:23 +02:00
..
AMR_intro.ai (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
Dosages_v_11.0_Breakpoint_Tables.xlsx (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
Loinc.csv new tibble export 2022-08-27 20:49:37 +02:00
SNOMED_PHVS_Microorganism_CDC_V12.txt (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
_install_deps.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
_language_update.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
_pre_commit_hook.R fix export of lists in `antibiotics` and `antivirals` 2022-10-29 16:17:48 +02:00
ab.md5 ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.dta ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.feather ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.parquet ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.rds ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.sas ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.sav ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.txt ATC and DDD update 2022-10-29 19:01:23 +02:00
antibiotics.xlsx ATC and DDD update 2022-10-29 19:01:23 +02:00
antivirals.dta data export 2022-08-27 20:51:26 +02:00
antivirals.feather data export 2022-08-27 20:51:26 +02:00
antivirals.parquet data export 2022-08-27 20:51:26 +02:00
antivirals.rds data export 2022-08-27 20:51:26 +02:00
antivirals.sas data export 2022-08-27 20:51:26 +02:00
antivirals.sav data export 2022-08-27 20:51:26 +02:00
antivirals.txt fix export of lists in `antibiotics` and `antivirals` 2022-10-29 16:17:48 +02:00
antivirals.xlsx fix export of lists in `antibiotics` and `antivirals` 2022-10-29 16:17:48 +02:00
av.md5 data export 2022-08-27 20:51:26 +02:00
create_survey_page.R (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
dosage.dta data export 2022-08-27 20:51:26 +02:00
dosage.feather data export 2022-08-27 20:51:26 +02:00
dosage.md5 data export 2022-08-27 20:51:26 +02:00
dosage.parquet data export 2022-08-27 20:51:26 +02:00
dosage.rds data export 2022-08-27 20:51:26 +02:00
dosage.sas data export 2022-08-27 20:51:26 +02:00
dosage.sav data export 2022-08-27 20:51:26 +02:00
dosage.txt (v1.5.0.9011) small dosage update 2021-01-24 23:27:11 +01:00
dosage.xlsx data export 2022-08-27 20:51:26 +02:00
eucast_rules.tsv (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
intrinsicR.md5 New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.dta New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.feather New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.md5 (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
intrinsic_resistant.parquet New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.rds New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.sas New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.sav New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.txt New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
intrinsic_resistant.xlsx New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
logo.svg (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
loinc.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
microorganisms.dta fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.feather fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.md5 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.parquet fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.rds fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.sas fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.sav fix missing R breakpoints 2022-10-29 14:15:23 +02:00
microorganisms.txt fix txt export of microorganisms 2022-10-29 16:08:18 +02:00
microorganisms.xlsx fix export of lists in `antibiotics` and `antivirals` 2022-10-29 16:17:48 +02:00
mo.md5 language updates 2022-08-19 12:33:14 +02:00
poorman_prepend.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
read_EUCAST.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
reproduction_of_antibiotics.R ATC and DDD update 2022-10-29 19:01:23 +02:00
reproduction_of_antivirals.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
reproduction_of_dosage.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
reproduction_of_example_isolates_unclean.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
reproduction_of_intrinsic_resistant.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
reproduction_of_microorganisms.R fix missing R breakpoints 2022-10-29 14:15:23 +02:00
reproduction_of_poorman.R styled, unit test fix 2022-08-28 10:31:50 +02:00
reproduction_of_rsi_translation.R ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi.md5 ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.dta ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.feather ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.parquet ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.rds ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.sas ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.sav ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.txt ATC and DDD update 2022-10-29 19:01:23 +02:00
rsi_translation.xlsx ATC and DDD update 2022-10-29 19:01:23 +02:00
taxonomy.rds New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
taxonomy_gbif.rds New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
taxonomy_lpsn.rds New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
tinytest_1.3.1.tar.gz (v1.7.1.9033) dplyr grouping fix on windows? 2021-08-30 15:01:32 +02:00
toxoplasma.R styled, unit test fix 2022-08-28 10:31:50 +02:00
translations.tsv fix for mo type translation 2022-10-06 12:11:51 +02:00
v_10.0_Breakpoint_Tables.xlsx (v0.9.0.9022) inheritance fix 2020-02-10 14:18:15 +01:00
v_11.0_Breakpoint_Tables.xlsx (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
v_12.0_Breakpoint_Tables.xlsx (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
whonet_bugfixes.R (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00