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3f50d6b6c333c14598eb74132b1d0f49481f6cb2
AMR/man
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dr. M.S. (Matthijs) Berends 177e83aaf8 (v3.0.1.9089) Remove old expert rules that conflict with expected resistant phenotypes
2026-09-03 15:53:29 +02:00
..
ab_from_text.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
ab_property.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
add_custom_antimicrobials.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
add_custom_microorganisms.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
age_groups.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
age.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
amr_course.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
AMR-deprecated.Rd
Generalise interpretive rules for multi-guideline support (#268) (#283)
2026-05-01 18:38:51 +01:00
AMR-options.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
amr-tidymodels.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
AMR.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
antibiogram.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
antimicrobial_selectors.Rd
(v3.0.1.9079) docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'
2026-06-27 14:31:58 +02:00
antimicrobials.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
as.ab.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
as.av.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
as.disk.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
as.mic.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
as.mo.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
as.sir.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
atc_online.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
av_from_text.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
av_property.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
availability.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
bug_drug_combinations.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
clinical_breakpoints.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
count.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
custom_interpretive_rules.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
custom_mdro_guideline.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
dosage.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
esbl_isolates.Rd
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
example_isolates_unclean.Rd
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
example_isolates.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
export_ncbi_biosample.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
first_isolate.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
g.test.Rd
(v3.0.1.9086) new eucast update flow
2026-08-13 11:12:12 +02:00
get_episode.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
ggplot_pca.Rd
(v3.0.1.9086) new eucast update flow
2026-08-13 11:12:12 +02:00
ggplot_sir.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
guess_ab_col.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
interpretive_rules.Rd
(v3.0.1.9089) Remove old expert rules that conflict with expected resistant phenotypes
2026-09-03 15:53:29 +02:00
intrinsic_resistant.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
italicise_taxonomy.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
join.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
key_antimicrobials.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
kurtosis.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
like.Rd
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
mdro.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
mean_amr_distance.Rd
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
microorganisms.codes.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
microorganisms.groups.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
microorganisms.Rd
(v3.0.1.9066) fix documentation
2026-06-24 19:34:47 +02:00
mo_matching_score.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
mo_property.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
mo_source.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
pca.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
plot.Rd
(v3.0.1.9088) add version number to intrinsic_resistant
2026-09-03 12:14:25 +02:00
proportion.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
random.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
resistance_predict.Rd
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
skewness.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
top_n_microorganisms.Rd
improve top_n_microorganisms(): add property_for_each, fix property=NULL, enforce rank order (#297)
2026-06-26 21:40:11 +02:00
translate.Rd
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
WHOCC.Rd
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
WHONET.Rd
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00