mirror of https://github.com/msberends/AMR.git
39 lines
1.7 KiB
R
39 lines
1.7 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/catalogue_of_life.R
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\name{catalogue_of_life_version}
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\alias{catalogue_of_life_version}
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\title{Version info of included Catalogue of Life}
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\usage{
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catalogue_of_life_version()
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}
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\value{
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a \code{list}, which prints in pretty format
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}
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\description{
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This function returns information about the included data from the Catalogue of Life.
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}
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\details{
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For DSMZ, see \code{?microorganisms}.
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}
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\section{Catalogue of Life}{
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\if{html}{\figure{logo_col.png}{options: height=40px style=margin-bottom:5px} \cr}
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This package contains the complete taxonomic tree of almost all microorganisms (~65,000 species) from the authoritative and comprehensive Catalogue of Life (\url{http://www.catalogueoflife.org}). The Catalogue of Life is the most comprehensive and authoritative global index of species currently available.
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\link[=catalogue_of_life]{Click here} for more information about the included taxa. The Catalogue of Life releases updates annually; check which version was included in this package with \code{\link{catalogue_of_life_version}()}.
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}
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\section{Read more on our website!}{
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On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
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}
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\examples{
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library(dplyr)
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microorganisms \%>\% freq(kingdom)
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microorganisms \%>\% group_by(kingdom) \%>\% freq(phylum, nmax = NULL)
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}
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\seealso{
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\code{\link{microorganisms}}
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}
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