mirror of https://github.com/msberends/AMR.git
31 lines
1.8 KiB
R
31 lines
1.8 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# AUTHORS #
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# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# LICENCE #
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# This package is free software; you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License version 2.0, #
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# as published by the Free Software Foundation. #
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# #
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# This R package is distributed in the hope that it will be useful, #
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License version 2.0 for more details. #
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# ==================================================================== #
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context("key_antibiotics.R")
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test_that("keyantibiotics work", {
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expect_equal(length(key_antibiotics(septic_patients, warnings = FALSE)), nrow(septic_patients))
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expect_false(all(is.na(key_antibiotics(septic_patients))))
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expect_true(key_antibiotics_equal("SSS", "SSS"))
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expect_false(key_antibiotics_equal("SSS", "SRS"))
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expect_true(key_antibiotics_equal("SSS", "SIS", ignore_I = TRUE))
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expect_false(key_antibiotics_equal("SSS", "SIS", ignore_I = FALSE))
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expect_true(key_antibiotics_equal(".SS", "SI.", ignore_I = TRUE))
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expect_false(key_antibiotics_equal(".SS", "SI.", ignore_I = FALSE))
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})
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