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70 lines
3.1 KiB
R
Executable File
70 lines
3.1 KiB
R
Executable File
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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# Visit our website for more info: https://msberends.gitab.io/AMR. #
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# ==================================================================== #
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context("atc.R")
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# test_that("atc_property works", {
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# skip_on_cran() # relies on internet connection of server, don't test
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# skip_on_appveyor() # security error on AppVeyor
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#
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# if (!is.null(curl::nslookup("www.whocc.no", error = FALSE))) {
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# expect_equal(tolower(atc_property("J01CA04", property = "Name")), "amoxicillin")
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# expect_equal(atc_property("J01CA04", property = "unit"), "g")
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# expect_equal(atc_property("J01CA04", property = "DDD"),
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# atc_ddd("J01CA04"))
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#
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# expect_identical(atc_property("J01CA04", property = "Groups"),
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# atc_groups("J01CA04"))
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#
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# expect_warning(atc_property("ABCDEFG", property = "DDD"))
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#
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# expect_error(atc_property("J01CA04", property = c(1:5)))
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# expect_error(atc_property("J01CA04", property = "test"))
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# expect_error(atc_property("J01CA04", property = "test", administration = c(1:5)))
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# }
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# })
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test_that("guess_atc works", {
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expect_equal(as.character(guess_atc(c("J01FA01",
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"Erythromycin",
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"eryt",
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"ERYT",
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"ERY",
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"Erythrocin",
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"Eryzole",
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"Pediamycin"))),
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rep("J01FA01", 8))
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expect_identical(class(as.atc("amox")), "atc")
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expect_identical(class(pull(antibiotics, atc)), "atc")
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expect_identical(ab_trivial_nl("Cefmenoxim"), "Cefmenoxim")
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expect_warning(as.atc("Z00ZZ00")) # not yet available in data set
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expect_warning(as.atc("UNKNOWN"))
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expect_output(print(as.atc("amox")))
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# first 5 chars of official name
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expect_equal(as.character(as.atc(c("nitro", "cipro"))),
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c("J01XE01", "J01MA02"))
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})
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